sparse-checkout: disable sparse-index

We use 'git sparse-checkout init --cone --sparse-index' to toggle the
sparse-index feature. It makes sense to also disable it when running
'git sparse-checkout disable'. This is particularly important because it
removes the extensions.sparseIndex config option, allowing other tools
to use this Git repository again.

This does mean that 'git sparse-checkout init' will not re-enable the
sparse-index feature, even if it was previously enabled.

While testing this feature, I noticed that the sparse-index was not
being written on the first run, but by a second. This was caught by the
call to 'test-tool read-cache --table'. This requires adjusting some
assignments to core_apply_sparse_checkout and pl.use_cone_patterns in
the sparse_checkout_init() logic.

Signed-off-by: Derrick Stolee <dstolee@microsoft.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>

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