27 files changed, 264 insertions, 57 deletions
diff --git a/builtin-add.c b/builtin-add.c
index 850e1c23e5..4fc9d6f7cc 100644
--- a/builtin-add.c
+++ b/builtin-add.c
@@ -117,7 +117,7 @@ static void update(int verbose, const char *prefix, const char **files)
 	rev.diffopt.format_callback_data = &verbose;
 	if (read_cache() < 0)
 		die("index file corrupt");
-	run_diff_files(&rev, 0);
+	run_diff_files(&rev, DIFF_RACY_IS_MODIFIED);
 }
 
 static void refresh(int verbose, const char **pathspec)
diff --git a/builtin-apply.c b/builtin-apply.c
index 5cc90e68f8..0fff02e0d8 100644
--- a/builtin-apply.c
+++ b/builtin-apply.c
@@ -2099,7 +2099,7 @@ static int verify_index_match(struct cache_entry *ce, struct stat *st)
 			return -1;
 		return 0;
 	}
-	return ce_match_stat(ce, st, 1);
+	return ce_match_stat(ce, st, CE_MATCH_IGNORE_VALID);
 }
 
 static int check_patch(struct patch *patch, struct patch *prev_patch)
diff --git a/builtin-branch.c b/builtin-branch.c
index 5f5c1823cb..c1e9a61ea5 100644
--- a/builtin-branch.c
+++ b/builtin-branch.c
@@ -276,7 +276,7 @@ static void print_ref_item(struct ref_item *item, int maxwidth, int verbose,
 		if (commit && !parse_commit(commit)) {
 			pretty_print_commit(CMIT_FMT_ONELINE, commit, ~0,
 					    &subject, &subject_len, 0,
-					    NULL, NULL, 0);
+					    NULL, NULL, 0, 0);
 			sub = subject;
 		}
 		printf("%c %s%-*s%s %s %s\n", c, branch_get_color(color),
diff --git a/builtin-log.c b/builtin-log.c
index c6cc3aef52..070886ae57 100644
--- a/builtin-log.c
+++ b/builtin-log.c
@@ -795,7 +795,7 @@ int cmd_cherry(int argc, const char **argv, const char *prefix)
 			char *buf = NULL;
 			unsigned long buflen = 0;
 			pretty_print_commit(CMIT_FMT_ONELINE, commit, ~0,
-			                    &buf, &buflen, 0, NULL, NULL, 0);
+			                    &buf, &buflen, 0, NULL, NULL, 0, 0);
 			printf("%c %s %s\n", sign,
 			       sha1_to_hex(commit->object.sha1), buf);
 			free(buf);
diff --git a/builtin-pack-objects.c b/builtin-pack-objects.c
index 12509faa77..228040486e 100644
--- a/builtin-pack-objects.c
+++ b/builtin-pack-objects.c
@@ -989,7 +989,7 @@ static void add_pbase_object(struct tree_desc *tree,
 			return;
 		if (name[cmplen] != '/') {
 			add_object_entry(entry.sha1,
-					 S_ISDIR(entry.mode) ? OBJ_TREE : OBJ_BLOB,
+					 object_type(entry.mode),
 					 fullname, 1);
 			return;
 		}
diff --git a/builtin-rev-list.c b/builtin-rev-list.c
index ac551d59f3..9dbfae416c 100644
--- a/builtin-rev-list.c
+++ b/builtin-rev-list.c
@@ -84,7 +84,7 @@ static void show_commit(struct commit *commit)
 		unsigned long buflen = 0;
 		pretty_print_commit(revs.commit_format, commit, ~0,
 				    &buf, &buflen,
-				    revs.abbrev, NULL, NULL, revs.date_mode);
+				    revs.abbrev, NULL, NULL, revs.date_mode, 0);
 		printf("%s%c", buf, hdr_termination);
 		free(buf);
 	}
diff --git a/builtin-show-branch.c b/builtin-show-branch.c
index 4fa87f6081..b9cf1b379f 100644
--- a/builtin-show-branch.c
+++ b/builtin-show-branch.c
@@ -267,7 +267,7 @@ static void show_one_commit(struct commit *commit, int no_name)
 	if (commit->object.parsed) {
 		pretty_print_commit(CMIT_FMT_ONELINE, commit, ~0,
 				    &pretty, &pretty_len,
-				    0, NULL, NULL, 0);
+				    0, NULL, NULL, 0, 0);
 		pretty_str = pretty;
 	}
 	if (!prefixcmp(pretty_str, "[PATCH] "))
diff --git a/cache.h b/cache.h
index 60af6d3579..c9954d7808 100644
--- a/cache.h
+++ b/cache.h
@@ -174,8 +174,8 @@ extern struct index_state the_index;
 #define remove_file_from_cache(path) remove_file_from_index(&the_index, (path))
 #define add_file_to_cache(path, verbose) add_file_to_index(&the_index, (path), (verbose))
 #define refresh_cache(flags) refresh_index(&the_index, (flags), NULL, NULL)
-#define ce_match_stat(ce, st, really) ie_match_stat(&the_index, (ce), (st), (really))
-#define ce_modified(ce, st, really) ie_modified(&the_index, (ce), (st), (really))
+#define ce_match_stat(ce, st, options) ie_match_stat(&the_index, (ce), (st), (options))
+#define ce_modified(ce, st, options) ie_modified(&the_index, (ce), (st), (options))
 #endif
 
 enum object_type {
@@ -266,8 +266,14 @@ extern int remove_file_from_index(struct index_state *, const char *path);
 extern int add_file_to_index(struct index_state *, const char *path, int verbose);
 extern struct cache_entry *make_cache_entry(unsigned int mode, const unsigned char *sha1, const char *path, int stage, int refresh);
 extern int ce_same_name(struct cache_entry *a, struct cache_entry *b);
-extern int ie_match_stat(struct index_state *, struct cache_entry *, struct stat *, int);
-extern int ie_modified(struct index_state *, struct cache_entry *, struct stat *, int);
+
+/* do stat comparison even if CE_VALID is true */
+#define CE_MATCH_IGNORE_VALID		01
+/* do not check the contents but report dirty on racily-clean entries */
+#define CE_MATCH_RACY_IS_DIRTY	02
+extern int ie_match_stat(struct index_state *, struct cache_entry *, struct stat *, unsigned int);
+extern int ie_modified(struct index_state *, struct cache_entry *, struct stat *, unsigned int);
+
 extern int ce_path_match(const struct cache_entry *ce, const char **pathspec);
 extern int index_fd(unsigned char *sha1, int fd, struct stat *st, int write_object, enum object_type type, const char *path);
 extern int read_fd(int fd, char **return_buf, unsigned long *return_size);
diff --git a/check-racy.c b/check-racy.c
index d6a08b4a55..00d92a1663 100644
--- a/check-racy.c
+++ b/check-racy.c
@@ -18,7 +18,7 @@ int main(int ac, char **av)
 
 		if (ce_match_stat(ce, &st, 0))
 			dirty++;
-		else if (ce_match_stat(ce, &st, 2))
+		else if (ce_match_stat(ce, &st, CE_MATCH_RACY_IS_DIRTY))
 			racy++;
 		else
 			clean++;
diff --git a/commit.c b/commit.c
index 1fbdd2d51b..10f7b14e76 100644
--- a/commit.c
+++ b/commit.c
@@ -479,7 +479,7 @@ static int get_one_line(const char *msg, unsigned long len)
 }
 
 /* High bit set, or ISO-2022-INT */
-static int non_ascii(int ch)
+int non_ascii(int ch)
 {
 	ch = (ch & 0xff);
 	return ((ch & 0x80) || (ch == 0x1b));
@@ -1158,13 +1158,13 @@ unsigned long pretty_print_commit(enum cmit_fmt fmt,
 				  char **buf_p, unsigned long *space_p,
 				  int abbrev, const char *subject,
 				  const char *after_subject,
-				  enum date_mode dmode)
+				  enum date_mode dmode,
+				  int plain_non_ascii)
 {
 	unsigned long offset = 0;
 	unsigned long beginning_of_body;
 	int indent = 4;
 	const char *msg = commit->buffer;
-	int plain_non_ascii = 0;
 	char *reencoded;
 	const char *encoding;
 	char *buf;
diff --git a/commit.h b/commit.h
index 467872eeca..b897b5730d 100644
--- a/commit.h
+++ b/commit.h
@@ -60,8 +60,9 @@ enum cmit_fmt {
 	CMIT_FMT_UNSPECIFIED,
 };
 
+extern int non_ascii(int);
 extern enum cmit_fmt get_commit_format(const char *arg);
-extern unsigned long pretty_print_commit(enum cmit_fmt fmt, const struct commit *, unsigned long len, char **buf_p, unsigned long *space_p, int abbrev, const char *subject, const char *after_subject, enum date_mode dmode);
+extern unsigned long pretty_print_commit(enum cmit_fmt fmt, const struct commit *, unsigned long len, char **buf_p, unsigned long *space_p, int abbrev, const char *subject, const char *after_subject, enum date_mode dmode, int non_ascii_present);
 
 /** Removes the first commit from a list sorted by date, and adds all
  * of its parents.
diff --git a/diff-lib.c b/diff-lib.c
index da5571302d..ec1b5e3d44 100644
--- a/diff-lib.c
+++ b/diff-lib.c
@@ -173,9 +173,10 @@ static int is_in_index(const char *path)
 }
 
 static int handle_diff_files_args(struct rev_info *revs,
-		int argc, const char **argv, int *silent)
+				  int argc, const char **argv,
+				  unsigned int *options)
 {
-	*silent = 0;
+	*options = 0;
 
 	/* revs->max_count == -2 means --no-index */
 	while (1 < argc && argv[1][0] == '-') {
@@ -192,7 +193,7 @@ static int handle_diff_files_args(struct rev_info *revs,
 			revs->diffopt.no_index = 1;
 		}
 		else if (!strcmp(argv[1], "-q"))
-			*silent = 1;
+			*options |= DIFF_SILENT_ON_REMOVED;
 		else
 			return error("invalid option: %s", argv[1]);
 		argv++; argc--;
@@ -305,9 +306,9 @@ int setup_diff_no_index(struct rev_info *revs,
 
 int run_diff_files_cmd(struct rev_info *revs, int argc, const char **argv)
 {
-	int silent_on_removed;
+	unsigned int options;
 
-	if (handle_diff_files_args(revs, argc, argv, &silent_on_removed))
+	if (handle_diff_files_args(revs, argc, argv, &options))
 		return -1;
 
 	if (revs->diffopt.no_index) {
@@ -329,13 +330,16 @@ int run_diff_files_cmd(struct rev_info *revs, int argc, const char **argv)
 		perror("read_cache");
 		return -1;
 	}
-	return run_diff_files(revs, silent_on_removed);
+	return run_diff_files(revs, options);
 }
 
-int run_diff_files(struct rev_info *revs, int silent_on_removed)
+int run_diff_files(struct rev_info *revs, unsigned int option)
 {
 	int entries, i;
 	int diff_unmerged_stage = revs->max_count;
+	int silent_on_removed = option & DIFF_SILENT_ON_REMOVED;
+	unsigned ce_option = ((option & DIFF_RACY_IS_MODIFIED)
+			      ? CE_MATCH_RACY_IS_DIRTY : 0);
 
 	if (diff_unmerged_stage < 0)
 		diff_unmerged_stage = 2;
@@ -441,7 +445,7 @@ int run_diff_files(struct rev_info *revs, int silent_on_removed)
 				       ce->sha1, ce->name, NULL);
 			continue;
 		}
-		changed = ce_match_stat(ce, &st, 0);
+		changed = ce_match_stat(ce, &st, ce_option);
 		if (!changed && !revs->diffopt.find_copies_harder)
 			continue;
 		oldmode = ntohl(ce->ce_mode);
diff --git a/diff.h b/diff.h
index 4546aad219..efaa8f711a 100644
--- a/diff.h
+++ b/diff.h
@@ -224,7 +224,11 @@ extern void diff_flush(struct diff_options*);
 
 extern const char *diff_unique_abbrev(const unsigned char *, int);
 
-extern int run_diff_files(struct rev_info *revs, int silent_on_removed);
+/* do not report anything on removed paths */
+#define DIFF_SILENT_ON_REMOVED 01
+/* report racily-clean paths as modified */
+#define DIFF_RACY_IS_MODIFIED 02
+extern int run_diff_files(struct rev_info *revs, unsigned int option);
 extern int setup_diff_no_index(struct rev_info *revs,
 		int argc, const char ** argv, int nongit, const char *prefix);
 extern int run_diff_files_cmd(struct rev_info *revs, int argc, const char **argv);
diff --git a/entry.c b/entry.c
index fc3a506ece..ef88f62ce8 100644
--- a/entry.c
+++ b/entry.c
@@ -200,7 +200,7 @@ int checkout_entry(struct cache_entry *ce, const struct checkout *state, char *t
 	strcpy(path + len, ce->name);
 
 	if (!lstat(path, &st)) {
-		unsigned changed = ce_match_stat(ce, &st, 1);
+		unsigned changed = ce_match_stat(ce, &st, CE_MATCH_IGNORE_VALID);
 		if (!changed)
 			return 0;
 		if (!state->force) {
diff --git a/git-checkout.sh b/git-checkout.sh
index 17f43927aa..5ca71242e7 100755
--- a/git-checkout.sh
+++ b/git-checkout.sh
@@ -169,7 +169,7 @@ detach_warn=
 describe_detached_head () {
 	test -n "$quiet" || {
 		printf >&2 "$1 "
-		GIT_PAGER= git log >&2 -1 --pretty=oneline --abbrev-commit "$2"
+		GIT_PAGER= git log >&2 -1 --pretty=oneline --abbrev-commit "$2" --
 	}
 }
 
diff --git a/git-commit.sh b/git-commit.sh
index ab43217be4..1c0c6b9e41 100755
--- a/git-commit.sh
+++ b/git-commit.sh
@@ -26,7 +26,7 @@ refuse_partial () {
 }
 
 TMP_INDEX=
-THIS_INDEX="$GIT_DIR/index"
+THIS_INDEX="${GIT_INDEX_FILE:-$GIT_DIR/index}"
 NEXT_INDEX="$GIT_DIR/next-index$$"
 rm -f "$NEXT_INDEX"
 save_index () {
@@ -322,9 +322,9 @@ unset only
 case "$all,$interactive,$also,$#" in
 *t,*t,*)
 	die "Cannot use -a, --interactive or -i at the same time." ;;
-t,,[1-9]*)
+t,,,[1-9]*)
 	die "Paths with -a does not make sense." ;;
-,t,[1-9]*)
+,t,,[1-9]*)
 	die "Paths with --interactive does not make sense." ;;
 ,,t,0)
 	die "No paths with -i does not make sense." ;;
diff --git a/log-tree.c b/log-tree.c
index b509c0c7ec..9ebc24b687 100644
--- a/log-tree.c
+++ b/log-tree.c
@@ -140,6 +140,18 @@ static unsigned int digits_in_number(unsigned int number)
 	return result;
 }
 
+static int has_non_ascii(const char *s)
+{
+	int ch;
+	if (!s)
+		return 0;
+	while ((ch = *s++) != '\0') {
+		if (non_ascii(ch))
+			return 1;
+	}
+	return 0;
+}
+
 void show_log(struct rev_info *opt, const char *sep)
 {
 	char *msgbuf = NULL;
@@ -290,7 +302,8 @@ void show_log(struct rev_info *opt, const char *sep)
 	 */
 	len = pretty_print_commit(opt->commit_format, commit, ~0u,
 				  &msgbuf, &msgbuf_len, abbrev, subject,
-				  extra_headers, opt->date_mode);
+				  extra_headers, opt->date_mode,
+				  has_non_ascii(opt->add_signoff));
 
 	if (opt->add_signoff)
 		len = append_signoff(&msgbuf, &msgbuf_len, len,
diff --git a/read-cache.c b/read-cache.c
index 928e8fa1ae..c3dbf89426 100644
--- a/read-cache.c
+++ b/read-cache.c
@@ -194,11 +194,12 @@ static int ce_match_stat_basic(struct cache_entry *ce, struct stat *st)
 }
 
 int ie_match_stat(struct index_state *istate,
-		  struct cache_entry *ce, struct stat *st, int options)
+		  struct cache_entry *ce, struct stat *st,
+		  unsigned int options)
 {
 	unsigned int changed;
-	int ignore_valid = options & 01;
-	int assume_racy_is_modified = options & 02;
+	int ignore_valid = options & CE_MATCH_IGNORE_VALID;
+	int assume_racy_is_modified = options & CE_MATCH_RACY_IS_DIRTY;
 
 	/*
 	 * If it's marked as always valid in the index, it's
@@ -238,10 +239,11 @@ int ie_match_stat(struct index_state *istate,
 }
 
 int ie_modified(struct index_state *istate,
-		struct cache_entry *ce, struct stat *st, int really)
+		struct cache_entry *ce, struct stat *st, unsigned int options)
 {
 	int changed, changed_fs;
-	changed = ie_match_stat(istate, ce, st, really);
+
+	changed = ie_match_stat(istate, ce, st, options);
 	if (!changed)
 		return 0;
 	/*
@@ -386,6 +388,7 @@ int add_file_to_index(struct index_state *istate, const char *path, int verbose)
 	int size, namelen, pos;
 	struct stat st;
 	struct cache_entry *ce;
+	unsigned ce_option = CE_MATCH_IGNORE_VALID|CE_MATCH_RACY_IS_DIRTY;
 
 	if (lstat(path, &st))
 		die("%s: unable to stat (%s)", path, strerror(errno));
@@ -420,7 +423,7 @@ int add_file_to_index(struct index_state *istate, const char *path, int verbose)
 	pos = index_name_pos(istate, ce->name, namelen);
 	if (0 <= pos &&
 	    !ce_stage(istate->cache[pos]) &&
-	    !ie_modified(istate, istate->cache[pos], &st, 1)) {
+	    !ie_match_stat(istate, istate->cache[pos], &st, ce_option)) {
 		/* Nothing changed, really */
 		free(ce);
 		return 0;
@@ -782,11 +785,13 @@ int add_index_entry(struct index_state *istate, struct cache_entry *ce, int opti
  * to link up the stat cache details with the proper files.
  */
 static struct cache_entry *refresh_cache_ent(struct index_state *istate,
-					     struct cache_entry *ce, int really, int *err)
+					     struct cache_entry *ce,
+					     unsigned int options, int *err)
 {
 	struct stat st;
 	struct cache_entry *updated;
 	int changed, size;
+	int ignore_valid = options & CE_MATCH_IGNORE_VALID;
 
 	if (lstat(ce->name, &st) < 0) {
 		if (err)
@@ -794,16 +799,23 @@ static struct cache_entry *refresh_cache_ent(struct index_state *istate,
 		return NULL;
 	}
 
-	changed = ie_match_stat(istate, ce, &st, really);
+	changed = ie_match_stat(istate, ce, &st, options);
 	if (!changed) {
-		if (really && assume_unchanged &&
+		/*
+		 * The path is unchanged.  If we were told to ignore
+		 * valid bit, then we did the actual stat check and
+		 * found that the entry is unmodified.  If the entry
+		 * is not marked VALID, this is the place to mark it
+		 * valid again, under "assume unchanged" mode.
+		 */
+		if (ignore_valid && assume_unchanged &&
 		    !(ce->ce_flags & htons(CE_VALID)))
 			; /* mark this one VALID again */
 		else
 			return ce;
 	}
 
-	if (ie_modified(istate, ce, &st, really)) {
+	if (ie_modified(istate, ce, &st, options)) {
 		if (err)
 			*err = EINVAL;
 		return NULL;
@@ -814,13 +826,14 @@ static struct cache_entry *refresh_cache_ent(struct index_state *istate,
 	memcpy(updated, ce, size);
 	fill_stat_cache_info(updated, &st);
 
-	/* In this case, if really is not set, we should leave
-	 * CE_VALID bit alone.  Otherwise, paths marked with
-	 * --no-assume-unchanged (i.e. things to be edited) will
-	 * reacquire CE_VALID bit automatically, which is not
-	 * really what we want.
+	/*
+	 * If ignore_valid is not set, we should leave CE_VALID bit
+	 * alone.  Otherwise, paths marked with --no-assume-unchanged
+	 * (i.e. things to be edited) will reacquire CE_VALID bit
+	 * automatically, which is not really what we want.
 	 */
-	if (!really && assume_unchanged && !(ce->ce_flags & htons(CE_VALID)))
+	if (!ignore_valid && assume_unchanged &&
+	    !(ce->ce_flags & htons(CE_VALID)))
 		updated->ce_flags &= ~htons(CE_VALID);
 
 	return updated;
@@ -834,6 +847,7 @@ int refresh_index(struct index_state *istate, unsigned int flags, const char **p
 	int allow_unmerged = (flags & REFRESH_UNMERGED) != 0;
 	int quiet = (flags & REFRESH_QUIET) != 0;
 	int not_new = (flags & REFRESH_IGNORE_MISSING) != 0;
+	unsigned int options = really ? CE_MATCH_IGNORE_VALID : 0;
 
 	for (i = 0; i < istate->cache_nr; i++) {
 		struct cache_entry *ce, *new;
@@ -855,7 +869,7 @@ int refresh_index(struct index_state *istate, unsigned int flags, const char **p
 		if (pathspec && !match_pathspec(pathspec, ce->name, strlen(ce->name), 0, seen))
 			continue;
 
-		new = refresh_cache_ent(istate, ce, really, &cache_errno);
+		new = refresh_cache_ent(istate, ce, options, &cache_errno);
 		if (new == ce)
 			continue;
 		if (!new) {
diff --git a/revision.c b/revision.c
index 48756b5d44..0ba0729b08 100644
--- a/revision.c
+++ b/revision.c
@@ -65,10 +65,17 @@ void mark_tree_uninteresting(struct tree *tree)
 
 	init_tree_desc(&desc, tree->buffer, tree->size);
 	while (tree_entry(&desc, &entry)) {
-		if (S_ISDIR(entry.mode))
+		switch (object_type(entry.mode)) {
+		case OBJ_TREE:
 			mark_tree_uninteresting(lookup_tree(entry.sha1));
-		else
+			break;
+		case OBJ_BLOB:
 			mark_blob_uninteresting(lookup_blob(entry.sha1));
+			break;
+		default:
+			/* Subproject commit - not in this repository */
+			break;
+		}
 	}
 
 	/*
diff --git a/t/t2200-add-update.sh b/t/t2200-add-update.sh
index eb1ced3c37..24f892f793 100755
--- a/t/t2200-add-update.sh
+++ b/t/t2200-add-update.sh
@@ -1,6 +1,6 @@
 #!/bin/sh
 
-test_description='git add -u with path limiting
+test_description='git add -u
 
 This test creates a working tree state with three files:
 
@@ -9,7 +9,10 @@ This test creates a working tree state with three files:
   dir/other (untracked)
 
 and issues a git add -u with path limiting on "dir" to add
-only the updates to dir/sub.'
+only the updates to dir/sub.
+
+Also tested are "git add -u" without limiting, and "git add -u"
+without contents changes.'
 
 . ./test-lib.sh
 
@@ -85,4 +88,27 @@ test_expect_success 'replace a file with a symlink' '
 
 '
 
+test_expect_success 'add everything changed' '
+
+	git add -u &&
+	test -z "$(git diff-files)"
+
+'
+
+test_expect_success 'touch and then add -u' '
+
+	touch check &&
+	git add -u &&
+	test -z "$(git diff-files)"
+
+'
+
+test_expect_success 'touch and then add explicitly' '
+
+	touch check &&
+	git add check &&
+	test -z "$(git diff-files)"
+
+'
+
 test_done
diff --git a/t/t4021-format-patch-signer-mime.sh b/t/t4021-format-patch-signer-mime.sh
new file mode 100755
index 0000000000..67a70fadab
--- /dev/null
+++ b/t/t4021-format-patch-signer-mime.sh
@@ -0,0 +1,42 @@
+#!/bin/sh
+
+test_description='format-patch -s should force MIME encoding as needed'
+
+. ./test-lib.sh
+
+test_expect_success setup '
+
+	>F &&
+	git add F &&
+	git commit -m initial &&
+	echo new line >F &&
+
+	test_tick &&
+	git commit -m "This adds some lines to F" F
+
+'
+
+test_expect_success 'format normally' '
+
+	git format-patch --stdout -1 >output &&
+	! grep Content-Type output
+
+'
+
+test_expect_success 'format with signoff without funny signer name' '
+
+	git format-patch -s --stdout -1 >output &&
+	! grep Content-Type output
+
+'
+
+test_expect_success 'format with non ASCII signer name' '
+
+	GIT_COMMITTER_NAME="$B$O$^$N(B $B$U$K$*$&(B" \
+	git format-patch -s --stdout -1 >output &&
+	grep Content-Type output
+
+'
+
+test_done
+
diff --git a/t/t6008-rev-list-submodule.sh b/t/t6008-rev-list-submodule.sh
new file mode 100755
index 0000000000..88e96fb91b
--- /dev/null
+++ b/t/t6008-rev-list-submodule.sh
@@ -0,0 +1,42 @@
+#!/bin/sh
+#
+# Copyright (c) 2007 Johannes E. Schindelin
+#
+
+test_description='git rev-list involving submodules that this repo has'
+
+. ./test-lib.sh
+
+test_expect_success 'setup' '
+	: > file &&
+	git add file &&
+	test_tick &&
+	git commit -m initial &&
+	echo 1 > file &&
+	test_tick &&
+	git commit -m second file &&
+	echo 2 > file &&
+	test_tick &&
+	git commit -m third file &&
+
+	rm .git/index &&
+
+	: > super-file &&
+	git add super-file &&
+	git submodule add . sub &&
+	git symbolic-ref HEAD refs/heads/super &&
+	test_tick &&
+	git commit -m super-initial &&
+	echo 1 > super-file &&
+	test_tick &&
+	git commit -m super-first super-file &&
+	echo 2 > super-file &&
+	test_tick &&
+	git commit -m super-second super-file
+'
+
+test_expect_success "Ilari's test" '
+	git rev-list --objects super master ^super^
+'
+
+test_done
diff --git a/t/t7005-editor.sh b/t/t7005-editor.sh
index 28643b0da4..ed416e14e0 100755
--- a/t/t7005-editor.sh
+++ b/t/t7005-editor.sh
@@ -13,7 +13,6 @@ do
 done
 unset vi
 mv e-vi.sh vi
-PATH=".:$PATH"
 unset EDITOR VISUAL GIT_EDITOR
 
 test_expect_success setup '
@@ -59,7 +58,7 @@ do
 		;;
 	esac
 	test_expect_success "Using $i" '
-		git commit --amend &&
+		git --exec-path=. commit --amend &&
 		git show -s --pretty=oneline |
 		sed -e "s/^[0-9a-f]* //" >actual &&
 		diff actual expect
@@ -81,7 +80,7 @@ do
 		;;
 	esac
 	test_expect_success "Using $i (override)" '
-		git commit --amend &&
+		git --exec-path=. commit --amend &&
 		git show -s --pretty=oneline |
 		sed -e "s/^[0-9a-f]* //" >actual &&
 		diff actual expect
diff --git a/t/t7500-commit.sh b/t/t7500-commit.sh
index f11ada8617..26bd8ee469 100755
--- a/t/t7500-commit.sh
+++ b/t/t7500-commit.sh
@@ -93,4 +93,36 @@ test_expect_success 'commit message from file should override template' '
 	commit_msg_is "standard input msg<unknown>"
 '
 
+test_expect_success 'using alternate GIT_INDEX_FILE (1)' '
+
+	cp .git/index saved-index &&
+	(
+		echo some new content >file &&
+	        GIT_INDEX_FILE=.git/another_index &&
+		export GIT_INDEX_FILE &&
+		git add file &&
+		git commit -m "commit using another index" &&
+		git diff-index --exit-code HEAD &&
+		git diff-files --exit-code
+	) &&
+	cmp .git/index saved-index >/dev/null
+
+'
+
+test_expect_success 'using alternate GIT_INDEX_FILE (2)' '
+
+	cp .git/index saved-index &&
+	(
+		rm -f .git/no-such-index &&
+		GIT_INDEX_FILE=.git/no-such-index &&
+		export GIT_INDEX_FILE &&
+		git commit -m "commit using nonexistent index" &&
+		test -z "$(git ls-files)" &&
+		test -z "$(git ls-tree HEAD)"
+
+	) &&
+	cmp .git/index saved-index >/dev/null
+
+'
+
 test_done
diff --git a/t/t7501-commit.sh b/t/t7501-commit.sh
index b151b51a34..7f25689bb7 100755
--- a/t/t7501-commit.sh
+++ b/t/t7501-commit.sh
@@ -34,6 +34,16 @@ test_expect_failure \
 	"git-commit -C HEAD -m illegal"
 
 test_expect_failure \
+	"using paths with -a" \
+	"echo King of the bongo >file &&
+	git-commit -m foo -a file"
+
+test_expect_failure \
+	"using paths with --interactive" \
+	"echo bong-o-bong >file &&
+	echo 7 | git-commit -m foo --interactive file"
+
+test_expect_failure \
 	"using invalid commit with -C" \
 	"git-commit -C bogus"
 
diff --git a/tree-walk.h b/tree-walk.h
index db0fbdc701..903a7b0f48 100644
--- a/tree-walk.h
+++ b/tree-walk.h
@@ -7,6 +7,13 @@ struct name_entry {
 	unsigned int mode;
 };
 
+static inline enum object_type object_type(unsigned int mode)
+{
+	return S_ISDIR(mode) ? OBJ_TREE :
+		S_ISGITLINK(mode) ? OBJ_COMMIT :
+		OBJ_BLOB;
+}
+
 struct tree_desc {
 	const void *buffer;
 	struct name_entry entry;
diff --git a/unpack-trees.c b/unpack-trees.c
index ccfeb6e245..9411c67a06 100644
--- a/unpack-trees.c
+++ b/unpack-trees.c
@@ -406,7 +406,7 @@ static void verify_uptodate(struct cache_entry *ce,
 		return;
 
 	if (!lstat(ce->name, &st)) {
-		unsigned changed = ce_match_stat(ce, &st, 1);
+		unsigned changed = ce_match_stat(ce, &st, CE_MATCH_IGNORE_VALID);
 		if (!changed)
 			return;
 		/*
@@ -927,7 +927,7 @@ int oneway_merge(struct cache_entry **src,
 		if (o->reset) {
 			struct stat st;
 			if (lstat(old->name, &st) ||
-			    ce_match_stat(old, &st, 1))
+			    ce_match_stat(old, &st, CE_MATCH_IGNORE_VALID))
 				old->ce_flags |= htons(CE_UPDATE);
 		}
 		return keep_entry(old, o);