This change introduces a new API function
`git_graph_reachable_from_any()`, that answers the question whether a
commit is reachable from any of the provided commits through following
parent edges.

This function can take advantage of optimizations provided by the
existence of a `commit-graph` file, since it makes it faster to know
whether, given two commits X and Y, X cannot possibly be an reachable
from Y.

Part of: #5757

libgit2 does not use `type_t` suffixes as it's redundant; thus, rename
`git_merge_diff_type_t` to `git_merge_diff_t` for consistency.

Next to including several files, our "common.h" header also declares
various macros which are then used throughout the project. As such, we
have to make sure to always include this file first in all
implementation files. Otherwise, we might encounter problems or even
silent behavioural differences due to macros or defines not being
defined as they should be. So in fact, our header and implementation
files should make sure to always include "common.h" first.

This commit does so by establishing a common include pattern. Header
files inside of "src" will now always include "common.h" as its first
other file, separated by a newline from all the other includes to make
it stand out as special. There are two cases for the implementation
files. If they do have a matching header file, they will always include
this one first, leading to "common.h" being transitively included as
first file. If they do not have a matching header file, they instead
include "common.h" as first file themselves.

This fixes the outlined problems and will become our standard practice
for header and source files inside of the "src/" from now on.

Since the `apply` callback can defer, the `check` callback is not
necessary.  Removing the `check` callback further makes the `payload`
unnecessary along with the `cleanup` callback.

Allow merge users to configure a custom default merge driver via
`git_merge_options`.  Similarly, honor the `merge.default` configuration
option.

Consumers can now register custom merged drivers with
`git_merge_driver_register`.  This allows consumers to support the
merge drivers, as configured in `.gitattributes`.  Consumers will be
asked to perform the file-level merge when a custom driver is
configured.