submodule: detect duplicated submodule paths

When loading submodule names, we build a map of submodule paths and
their respective names. While looping over the configuration keys,
we do not check though whether a submodule path was seen already. This
leads to a memory leak in case we have multiple submodules with the same
path, as we just overwrite the old value in the map in that case.

Fix the error by verifying that the path to be added is not yet part of
the string map. Git does not allow to have multiple submodules for a
path anyway, so we now do the same and detect this duplication,
reporting it to the user.

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