3 files changed, 228 insertions, 214 deletions

diff --git a/src/diff_tform.c b/src/diff_tform.c
index d4b8cf30a..92c4036fb 100644
--- a/src/diff_tform.c
+++ b/src/diff_tform.c
@@ -436,7 +436,7 @@ static int similarity_init(
 		info->file, &info->odb_obj, info->repo);
 }
 
-static int similarity_calc(
+static int similarity_sig(
 	similarity_info *info,
 	const git_diff_find_options *opts,
 	void **cache)
@@ -566,16 +566,19 @@ static int similarity_measure(
 	/* check if file sizes are nowhere near each other */
 	if (a_file->size > 127 &&
 		b_file->size > 127 &&
-		(a_file->size > (b_file->size << 4) ||
-		 b_file->size > (a_file->size << 4)))
+		(a_file->size > (b_file->size << 3) ||
+		 b_file->size > (a_file->size << 3)))
 		goto cleanup;
 
 	/* update signature cache if needed */
-	if (!cache[a_idx] && (error = similarity_calc(&a_info, opts, cache)) < 0)
-		goto cleanup;
-
-	if (!cache[b_idx] && (error = similarity_calc(&b_info, opts, cache)) < 0)
-		goto cleanup;
+	if (!cache[a_idx]) {
+		if ((error = similarity_sig(&a_info, opts, cache)) < 0)
+			goto cleanup;
+	}
+	if (!cache[b_idx]) {
+		if ((error = similarity_sig(&b_info, opts, cache)) < 0)
+			goto cleanup;
+	}
 
 	/* calculate similarity provided that the metric choose to process
 	 * both the a and b files (some may not if file is too big, etc).
@@ -759,25 +762,30 @@ int git_diff_find_similar(
 	git_diff_list *diff,
 	git_diff_find_options *given_opts)
 {
-	size_t i, j, sigcache_size;
+	size_t s, t;
 	int error = 0, similarity;
-	git_diff_delta *from, *to;
+	git_diff_delta *src, *tgt;
 	git_diff_find_options opts;
-	size_t num_srcs = 0, num_tgts = 0, tried_srcs = 0, tried_tgts = 0;
+	size_t num_deltas, num_srcs = 0, num_tgts = 0;
+	size_t tried_srcs = 0, tried_tgts = 0;
 	size_t num_rewrites = 0, num_updates = 0, num_bumped = 0;
 	void **sigcache; /* cache of similarity metric file signatures */
-	diff_find_match *match_srcs = NULL, *match_tgts = NULL, *best_match;
+	diff_find_match *tgt2src = NULL;
+	diff_find_match *src2tgt = NULL;
+	diff_find_match *tgt2src_copy = NULL;
+	diff_find_match *best_match;
 	git_diff_file swap;
 
 	if ((error = normalize_find_opts(diff, &opts, given_opts)) < 0)
 		return error;
 
+	num_deltas = diff->deltas.length;
+
 	/* TODO: maybe abort if deltas.length > rename_limit ??? */
-	if (!git__is_uint32(diff->deltas.length))
+	if (!git__is_uint32(num_deltas))
 		return 0;
 
-	sigcache_size = diff->deltas.length * 2; /* keep size b/c diff may change */
-	sigcache = git__calloc(sigcache_size, sizeof(void *));
+	sigcache = git__calloc(num_deltas * 2, sizeof(void *));
 	GITERR_CHECK_ALLOC(sigcache);
 
 	/* Label rename sources and targets
@@ -785,11 +793,11 @@ int git_diff_find_similar(
 	 * This will also set self-similarity scores for MODIFIED files and
 	 * mark them for splitting if break-rewrites is enabled
 	 */
-	git_vector_foreach(&diff->deltas, i, to) {
-		if (is_rename_source(diff, &opts, i, sigcache))
+	git_vector_foreach(&diff->deltas, t, tgt) {
+		if (is_rename_source(diff, &opts, t, sigcache))
 			++num_srcs;
 
-		if (is_rename_target(diff, &opts, i, sigcache))
+		if (is_rename_target(diff, &opts, t, sigcache))
 			++num_tgts;
 	}
 
@@ -797,10 +805,15 @@ int git_diff_find_similar(
 	if (!num_srcs || !num_tgts)
 		goto cleanup;
 
-	match_tgts = git__calloc(diff->deltas.length, sizeof(diff_find_match));
-	GITERR_CHECK_ALLOC(match_tgts);
-	match_srcs = git__calloc(diff->deltas.length, sizeof(diff_find_match));
-	GITERR_CHECK_ALLOC(match_srcs);
+	src2tgt = git__calloc(num_deltas, sizeof(diff_find_match));
+	GITERR_CHECK_ALLOC(src2tgt);
+	tgt2src = git__calloc(num_deltas, sizeof(diff_find_match));
+	GITERR_CHECK_ALLOC(tgt2src);
+
+	if (FLAG_SET(&opts, GIT_DIFF_FIND_COPIES)) {
+		tgt2src_copy = git__calloc(num_deltas, sizeof(diff_find_match));
+		GITERR_CHECK_ALLOC(tgt2src_copy);
+	}
 
 	/*
 	 * Find best-fit matches for rename / copy candidates
@@ -809,47 +822,61 @@ int git_diff_find_similar(
 find_best_matches:
 	tried_tgts = num_bumped = 0;
 
-	git_vector_foreach(&diff->deltas, i, to) {
+	git_vector_foreach(&diff->deltas, t, tgt) {
 		/* skip things that are not rename targets */
-		if ((to->flags & GIT_DIFF_FLAG__IS_RENAME_TARGET) == 0)
+		if ((tgt->flags & GIT_DIFF_FLAG__IS_RENAME_TARGET) == 0)
 			continue;
 
 		tried_srcs = 0;
 
-		git_vector_foreach(&diff->deltas, j, from) {
+		git_vector_foreach(&diff->deltas, s, src) {
 			/* skip things that are not rename sources */
-			if ((from->flags & GIT_DIFF_FLAG__IS_RENAME_SOURCE) == 0)
+			if ((src->flags & GIT_DIFF_FLAG__IS_RENAME_SOURCE) == 0)
 				continue;
 
 			/* calculate similarity for this pair and find best match */
-			if (i == j)
+			if (s == t)
 				similarity = -1; /* don't measure self-similarity here */
 			else if ((error = similarity_measure(
-				&similarity, diff, &opts, sigcache, 2 * j, 2 * i + 1)) < 0)
+				&similarity, diff, &opts, sigcache, 2 * s, 2 * t + 1)) < 0)
 				goto cleanup;
 
-			/* if this pairing is better for the src and the tgt, keep it */
-			if (similarity > 0 &&
-				match_tgts[i].similarity < (uint32_t)similarity &&
-				match_srcs[j].similarity < (uint32_t)similarity)
+			if (similarity < 0)
+				continue;
+
+			/* is this a better rename? */
+			if (tgt2src[t].similarity < (uint32_t)similarity &&
+				src2tgt[s].similarity < (uint32_t)similarity)
 			{
-				if (match_tgts[i].similarity > 0) {
-					match_tgts[match_srcs[j].idx].similarity = 0;
-					match_srcs[match_tgts[i].idx].similarity = 0;
-					++num_bumped;
+				/* eject old mapping */
+				if (src2tgt[s].similarity > 0) {
+					tgt2src[src2tgt[s].idx].similarity = 0;
+					num_bumped++;
+				}
+				if (tgt2src[t].similarity > 0) {
+					src2tgt[tgt2src[t].idx].similarity = 0;
+					num_bumped++;
 				}
 
-				match_tgts[i].similarity = (uint32_t)similarity;
-				match_tgts[i].idx = (uint32_t)j;
+				/* write new mapping */
+				tgt2src[t].idx = s;
+				tgt2src[t].similarity = (uint32_t)similarity;
+				src2tgt[s].idx = t;
+				src2tgt[s].similarity = (uint32_t)similarity;
+			}
 
-				match_srcs[j].similarity = (uint32_t)similarity;
-				match_srcs[j].idx = (uint32_t)i;
+			/* keep best absolute match for copies */
+			if (tgt2src_copy != NULL &&
+				tgt2src_copy[t].similarity < (uint32_t)similarity)
+			{
+				tgt2src_copy[t].idx = s;
+				tgt2src_copy[t].similarity = (uint32_t)similarity;
 			}
 
 			if (++tried_srcs >= num_srcs)
 				break;
 
-			/* cap on maximum targets we'll examine (per "to" file) */
+			/* cap on maximum targets we'll examine (per "tgt" file) */
 			if (tried_srcs > opts.rename_limit)
 				break;
 		}
@@ -867,18 +894,21 @@ find_best_matches:
 
 	tried_tgts = 0;
 
-	git_vector_foreach(&diff->deltas, i, to) {
+	git_vector_foreach(&diff->deltas, t, tgt) {
 		/* skip things that are not rename targets */
-		if ((to->flags & GIT_DIFF_FLAG__IS_RENAME_TARGET) == 0)
+		if ((tgt->flags & GIT_DIFF_FLAG__IS_RENAME_TARGET) == 0)
 			continue;
 
 		/* check if this delta was the target of a similarity */
-		best_match = &match_tgts[i];
-		if (!best_match->similarity)
+		if (tgt2src[t].similarity)
+			best_match = &tgt2src[t];
+		else if (tgt2src_copy && tgt2src_copy[t].similarity)
+			best_match = &tgt2src_copy[t];
+		else
 			continue;
 
-		j = best_match->idx;
-		from = GIT_VECTOR_GET(&diff->deltas, j);
+		s = best_match->idx;
+		src = GIT_VECTOR_GET(&diff->deltas, s);
 
 		/* possible scenarios:
 		 * 1. from DELETE to ADD/UNTRACK/IGNORE = RENAME
@@ -888,101 +918,107 @@ find_best_matches:
 		 * 5. from OTHER to ADD/UNTRACK/IGNORE = OTHER + COPY
 		 */
 
-		if (from->status == GIT_DELTA_DELETED) {
+		if (src->status == GIT_DELTA_DELETED) {
 
-			if (delta_is_new_only(to)) {
+			if (delta_is_new_only(tgt)) {
 
 				if (best_match->similarity < opts.rename_threshold)
 					continue;
 
-				delta_make_rename(to, from, best_match->similarity);
+				delta_make_rename(tgt, src, best_match->similarity);
 
-				from->flags |= GIT_DIFF_FLAG__TO_DELETE;
+				src->flags |= GIT_DIFF_FLAG__TO_DELETE;
 				num_rewrites++;
 			} else {
-				assert(delta_is_split(to));
+				assert(delta_is_split(tgt));
 
 				if (best_match->similarity < opts.rename_from_rewrite_threshold)
 					continue;
 
-				memcpy(&swap, &to->old_file, sizeof(swap));
+				memcpy(&swap, &tgt->old_file, sizeof(swap));
 
-				delta_make_rename(to, from, best_match->similarity);
+				delta_make_rename(tgt, src, best_match->similarity);
 				num_rewrites--;
 
-				from->status = GIT_DELTA_DELETED;
-				memcpy(&from->old_file, &swap, sizeof(from->old_file));
-				memset(&from->new_file, 0, sizeof(from->new_file));
-				from->new_file.path = from->old_file.path;
-				from->new_file.flags |= GIT_DIFF_FLAG_VALID_OID;
+				src->status = GIT_DELTA_DELETED;
+				memcpy(&src->old_file, &swap, sizeof(src->old_file));
+				memset(&src->new_file, 0, sizeof(src->new_file));
+				src->new_file.path = src->old_file.path;
+				src->new_file.flags |= GIT_DIFF_FLAG_VALID_OID;
 
 				num_updates++;
 			}
 		}
 
-		else if (delta_is_split(from)) {
+		else if (delta_is_split(src)) {
 
-			if (delta_is_new_only(to)) {
+			if (delta_is_new_only(tgt)) {
 
 				if (best_match->similarity < opts.rename_threshold)
 					continue;
 
-				delta_make_rename(to, from, best_match->similarity);
+				delta_make_rename(tgt, src, best_match->similarity);
 
-				from->status = (diff->new_src == GIT_ITERATOR_TYPE_WORKDIR) ?
+				src->status = (diff->new_src == GIT_ITERATOR_TYPE_WORKDIR) ?
 					GIT_DELTA_UNTRACKED : GIT_DELTA_ADDED;
-				memset(&from->old_file, 0, sizeof(from->old_file));
-				from->old_file.path = from->new_file.path;
-				from->old_file.flags |= GIT_DIFF_FLAG_VALID_OID;
+				memset(&src->old_file, 0, sizeof(src->old_file));
+				src->old_file.path = src->new_file.path;
+				src->old_file.flags |= GIT_DIFF_FLAG_VALID_OID;
 
-				from->flags &= ~GIT_DIFF_FLAG__TO_SPLIT;
+				src->flags &= ~GIT_DIFF_FLAG__TO_SPLIT;
 				num_rewrites--;
 
 				num_updates++;
 			} else {
-				assert(delta_is_split(from));
+				assert(delta_is_split(src));
 
 				if (best_match->similarity < opts.rename_from_rewrite_threshold)
 					continue;
 
-				memcpy(&swap, &to->old_file, sizeof(swap));
+				memcpy(&swap, &tgt->old_file, sizeof(swap));
 
-				delta_make_rename(to, from, best_match->similarity);
+				delta_make_rename(tgt, src, best_match->similarity);
 				num_rewrites--;
 				num_updates++;
 
-				memcpy(&from->old_file, &swap, sizeof(from->old_file));
+				memcpy(&src->old_file, &swap, sizeof(src->old_file));
 
 				/* if we've just swapped the new element into the correct
 				 * place, clear the SPLIT flag
 				 */
-				if (match_tgts[j].idx == i &&
-					match_tgts[j].similarity >
+				if (tgt2src[s].idx == t &&
+					tgt2src[s].similarity >
 					opts.rename_from_rewrite_threshold) {
-
-					from->status     = GIT_DELTA_RENAMED;
-					from->similarity = match_tgts[j].similarity;
-					match_tgts[j].similarity = 0;
-					from->flags &= ~GIT_DIFF_FLAG__TO_SPLIT;
+					src->status     = GIT_DELTA_RENAMED;
+					src->similarity = tgt2src[s].similarity;
+					tgt2src[s].similarity = 0;
+					src->flags &= ~GIT_DIFF_FLAG__TO_SPLIT;
 					num_rewrites--;
 				}
 				/* otherwise, if we just overwrote a source, update mapping */
-				else if (j > i && match_srcs[i].similarity > 0) {
-					match_tgts[match_srcs[i].idx].idx = (uint32_t)j;
+				else if (s > t && src2tgt[t].similarity > 0) {
+					/* what used to be at src t is now at src s */
+					tgt2src[src2tgt[t].idx].idx = (uint32_t)s;
 				}
 
 				num_updates++;
 			}
 		}
 
-		else if (delta_is_new_only(to)) {
-			if (!FLAG_SET(&opts, GIT_DIFF_FIND_COPIES) ||
-				best_match->similarity < opts.copy_threshold)
+		else if (delta_is_new_only(tgt)) {
+			if (!FLAG_SET(&opts, GIT_DIFF_FIND_COPIES))
+				continue;
+
+			if (tgt2src_copy[t].similarity < opts.copy_threshold)
 				continue;
 
-			to->status     = GIT_DELTA_COPIED;
-			to->similarity = best_match->similarity;
-			memcpy(&to->old_file, &from->old_file, sizeof(to->old_file));
+			/* always use best possible source for copy */
+			best_match = &tgt2src_copy[t];
+			src = GIT_VECTOR_GET(&diff->deltas, best_match->idx);
+
+			tgt->status     = GIT_DELTA_COPIED;
+			tgt->similarity = best_match->similarity;
+			memcpy(&tgt->old_file, &src->old_file, sizeof(tgt->old_file));
 
 			num_updates++;
 		}
@@ -998,12 +1034,13 @@ find_best_matches:
 			FLAG_SET(&opts, GIT_DIFF_BREAK_REWRITES));
 
 cleanup:
-	git__free(match_srcs);
-	git__free(match_tgts);
+	git__free(tgt2src);
+	git__free(src2tgt);
+	git__free(tgt2src_copy);
 
-	for (i = 0; i < sigcache_size; ++i) {
-		if (sigcache[i] != NULL)
-			opts.metric->free_signature(sigcache[i], opts.metric->payload);
+	for (t = 0; t < num_deltas * 2; ++t) {
+		if (sigcache[t] != NULL)
+			opts.metric->free_signature(sigcache[t], opts.metric->payload);
 	}
 	git__free(sigcache);
 
diff --git a/src/hashsig.c b/src/hashsig.c
index a11c4bee7..109f966ba 100644
--- a/src/hashsig.c
+++ b/src/hashsig.c
@@ -13,12 +13,15 @@ typedef uint64_t hashsig_state;
 
 #define HASHSIG_SCALE 100
 
-#define HASHSIG_HASH_WINDOW 32
-#define HASHSIG_HASH_START	0
+#define HASHSIG_MAX_RUN 80
+#define HASHSIG_HASH_START	0x012345678ABCDEF0LL
 #define HASHSIG_HASH_SHIFT  5
-#define HASHSIG_HASH_MASK   0x7FFFFFFF
+
+#define HASHSIG_HASH_MIX(S,CH) \
+	(S) = ((S) << HASHSIG_HASH_SHIFT) - (S) + (hashsig_state)(CH)
 
 #define HASHSIG_HEAP_SIZE ((1 << 7) - 1)
+#define HASHSIG_HEAP_MIN_SIZE 4
 
 typedef int (*hashsig_cmp)(const void *a, const void *b, void *);
 
@@ -28,14 +31,6 @@ typedef struct {
 	hashsig_t values[HASHSIG_HEAP_SIZE];
 } hashsig_heap;
 
-typedef struct {
-	hashsig_state state, shift_n;
-	char window[HASHSIG_HASH_WINDOW];
-	int win_len, win_pos, saw_lf;
-} hashsig_in_progress;
-
-#define HASHSIG_IN_PROGRESS_INIT { HASHSIG_HASH_START, 1, {0}, 0, 0, 1 }
-
 struct git_hashsig {
 	hashsig_heap mins;
 	hashsig_heap maxs;
@@ -115,142 +110,109 @@ static void hashsig_heap_sort(hashsig_heap *h)
 
 static void hashsig_heap_insert(hashsig_heap *h, hashsig_t val)
 {
-	/* if heap is full, pop top if new element should replace it */
-	if (h->size == h->asize && h->cmp(&val, &h->values[0], NULL) > 0) {
-		h->size--;
-		h->values[0] = h->values[h->size];
-		hashsig_heap_down(h, 0);
-	}
-
 	/* if heap is not full, insert new element */
 	if (h->size < h->asize) {
 		h->values[h->size++] = val;
 		hashsig_heap_up(h, h->size - 1);
 	}
-}
-
-GIT_INLINE(bool) hashsig_include_char(
-	char ch, git_hashsig_option_t opt, int *saw_lf)
-{
-	if ((opt & GIT_HASHSIG_IGNORE_WHITESPACE) && git__isspace(ch))
-		return false;
-
-	if (opt & GIT_HASHSIG_SMART_WHITESPACE) {
-		if (ch == '\r' || (*saw_lf && git__isspace(ch)))
-			return false;
 
-		*saw_lf = (ch == '\n');
+	/* if heap is full, pop top if new element should replace it */
+	else if (h->cmp(&val, &h->values[0], NULL) > 0) {
+		h->size--;
+		h->values[0] = h->values[h->size];
+		hashsig_heap_down(h, 0);
 	}
 
-	return true;
 }
 
-static void hashsig_initial_window(
-	git_hashsig *sig,
-	const char **data,
-	size_t size,
-	hashsig_in_progress *prog)
-{
-	hashsig_state state, shift_n;
-	int win_len, saw_lf = prog->saw_lf;
-	const char *scan, *end;
-	char *window = &prog->window[0];
-
-	/* init until we have processed at least HASHSIG_HASH_WINDOW data */
-
-	if (prog->win_len >= HASHSIG_HASH_WINDOW)
-		return;
-
-	state   = prog->state;
-	win_len = prog->win_len;
-	shift_n = prog->shift_n;
-
-	scan = *data;
-	end  = scan + size;
-
-	while (scan < end && win_len < HASHSIG_HASH_WINDOW) {
-		char ch = *scan++;
-
-		if (!hashsig_include_char(ch, sig->opt, &saw_lf))
-			continue;
-
-		state = (state * HASHSIG_HASH_SHIFT + ch) & HASHSIG_HASH_MASK;
-
-		if (!win_len)
-			shift_n = 1;
-		else
-			shift_n = (shift_n * HASHSIG_HASH_SHIFT) & HASHSIG_HASH_MASK;
-
-		window[win_len++] = ch;
-	}
-
-	/* insert initial hash if we just finished */
+typedef struct {
+	int use_ignores;
+	uint8_t ignore_ch[256];
+} hashsig_in_progress;
 
-	if (win_len == HASHSIG_HASH_WINDOW) {
-		hashsig_heap_insert(&sig->mins, (hashsig_t)state);
-		hashsig_heap_insert(&sig->maxs, (hashsig_t)state);
-		sig->considered = 1;
+static void hashsig_in_progress_init(
+	hashsig_in_progress *prog, git_hashsig *sig)
+{
+	int i;
+
+	switch (sig->opt) {
+	case GIT_HASHSIG_IGNORE_WHITESPACE:
+		for (i = 0; i < 256; ++i)
+			prog->ignore_ch[i] = git__isspace_nonlf(i);
+		prog->use_ignores = 1;
+		break;
+	case GIT_HASHSIG_SMART_WHITESPACE:
+		for (i = 0; i < 256; ++i)
+			prog->ignore_ch[i] = git__isspace(i);
+		prog->use_ignores = 1;
+		break;
+	default:
+		memset(prog, 0, sizeof(*prog));
+		break;
 	}
-
-	prog->state   = state;
-	prog->win_len = win_len;
-	prog->shift_n = shift_n;
-	prog->saw_lf  = saw_lf;
-
-	*data = scan;
 }
 
+#define HASHSIG_IN_PROGRESS_INIT { 1 }
+
 static int hashsig_add_hashes(
 	git_hashsig *sig,
-	const char *data,
+	const uint8_t *data,
 	size_t size,
 	hashsig_in_progress *prog)
 {
-	const char *scan = data, *end = data + size;
-	hashsig_state state, shift_n, rmv;
-	int win_pos, saw_lf;
-	char *window = &prog->window[0];
-
-	if (prog->win_len < HASHSIG_HASH_WINDOW)
-		hashsig_initial_window(sig, &scan, size, prog);
-
-	state   = prog->state;
-	shift_n = prog->shift_n;
-	saw_lf  = prog->saw_lf;
-	win_pos = prog->win_pos;
-
-	/* advance window, adding new chars and removing old */
-
-	for (; scan < end; ++scan) {
-		char ch = *scan;
-
-		if (!hashsig_include_char(ch, sig->opt, &saw_lf))
-			continue;
-
-		rmv = shift_n * window[win_pos];
+	const uint8_t *scan = data, *end = data + size;
+	hashsig_state state = HASHSIG_HASH_START;
+	int use_ignores = prog->use_ignores, len;
+	uint8_t ch;
+
+	while (scan < end) {
+		state = HASHSIG_HASH_START;
+
+		for (len = 0; scan < end && len < HASHSIG_MAX_RUN; ) {
+			ch = *scan;
+
+			if (use_ignores)
+				for (; scan < end && git__isspace_nonlf(ch); ch = *scan)
+					++scan;
+			else if (sig->opt != GIT_HASHSIG_NORMAL)
+				for (; scan < end && ch == '\r'; ch = *scan)
+					++scan;
+
+			/* peek at next character to decide what to do next */
+			if (sig->opt == GIT_HASHSIG_SMART_WHITESPACE)
+				use_ignores = (ch == '\n');
+
+			if (scan >= end)
+				break;
+			++scan;
+
+			/* check run terminator */
+			if (ch == '\n' || ch == '\0')
+				break;
+
+			++len;
+			HASHSIG_HASH_MIX(state, ch);
+		}
 
-		state = (state - rmv) & HASHSIG_HASH_MASK;
-		state = (state * HASHSIG_HASH_SHIFT) & HASHSIG_HASH_MASK;
-		state = (state + ch) & HASHSIG_HASH_MASK;
+		if (len > 0) {
+			hashsig_heap_insert(&sig->mins, (hashsig_t)state);
+			hashsig_heap_insert(&sig->maxs, (hashsig_t)state);
 
-		hashsig_heap_insert(&sig->mins, (hashsig_t)state);
-		hashsig_heap_insert(&sig->maxs, (hashsig_t)state);
-		sig->considered++;
+			sig->considered++;
 
-		window[win_pos] = ch;
-		win_pos = (win_pos + 1) % HASHSIG_HASH_WINDOW;
+			while (scan < end && (*scan == '\n' || !*scan))
+				++scan;
+		}
 	}
 
-	prog->state   = state;
-	prog->saw_lf  = saw_lf;
-	prog->win_pos = win_pos;
+	prog->use_ignores = use_ignores;
 
 	return 0;
 }
 
 static int hashsig_finalize_hashes(git_hashsig *sig)
 {
-	if (sig->mins.size < HASHSIG_HEAP_SIZE) {
+	if (sig->mins.size < HASHSIG_HEAP_MIN_SIZE) {
 		giterr_set(GITERR_INVALID,
 			"File too small for similarity signature calculation");
 		return GIT_EBUFS;
@@ -282,11 +244,13 @@ int git_hashsig_create(
 	git_hashsig_option_t opts)
 {
 	int error;
-	hashsig_in_progress prog = HASHSIG_IN_PROGRESS_INIT;
+	hashsig_in_progress prog;
 	git_hashsig *sig = hashsig_alloc(opts);
 	GITERR_CHECK_ALLOC(sig);
 
-	error = hashsig_add_hashes(sig, buf, buflen, &prog);
+	hashsig_in_progress_init(&prog, sig);
+
+	error = hashsig_add_hashes(sig, (const uint8_t *)buf, buflen, &prog);
 
 	if (!error)
 		error = hashsig_finalize_hashes(sig);
@@ -304,10 +268,10 @@ int git_hashsig_create_fromfile(
 	const char *path,
 	git_hashsig_option_t opts)
 {
-	char buf[0x1000];
+	uint8_t buf[0x1000];
 	ssize_t buflen = 0;
 	int error = 0, fd;
-	hashsig_in_progress prog = HASHSIG_IN_PROGRESS_INIT;
+	hashsig_in_progress prog;
 	git_hashsig *sig = hashsig_alloc(opts);
 	GITERR_CHECK_ALLOC(sig);
 
@@ -316,6 +280,8 @@ int git_hashsig_create_fromfile(
 		return fd;
 	}
 
+	hashsig_in_progress_init(&prog, sig);
+
 	while (!error) {
 		if ((buflen = p_read(fd, buf, sizeof(buf))) <= 0) {
 			if ((error = (int)buflen) < 0)
@@ -370,6 +336,12 @@ static int hashsig_heap_compare(const hashsig_heap *a, const hashsig_heap *b)
 
 int git_hashsig_compare(const git_hashsig *a, const git_hashsig *b)
 {
-	return (hashsig_heap_compare(&a->mins, &b->mins) +
-			hashsig_heap_compare(&a->maxs, &b->maxs)) / 2;
+	/* if we have fewer than the maximum number of elements, then just use
+	 * one array since the two arrays will be the same
+	 */
+	if (a->mins.size < HASHSIG_HEAP_SIZE)
+		return hashsig_heap_compare(&a->mins, &b->mins);
+	else
+		return (hashsig_heap_compare(&a->mins, &b->mins) +
+				hashsig_heap_compare(&a->maxs, &b->maxs)) / 2;
 }
diff --git a/src/util.h b/src/util.h
index a97c9bf39..ed9624770 100644
--- a/src/util.h
+++ b/src/util.h
@@ -294,6 +294,11 @@ GIT_INLINE(bool) git__isspace(int c)
 	return (c == ' ' || c == '\t' || c == '\n' || c == '\f' || c == '\r' || c == '\v' || c == 0x85 /* Unicode CR+LF */);
 }
 
+GIT_INLINE(bool) git__isspace_nonlf(int c)
+{
+	return (c == ' ' || c == '\t' || c == '\f' || c == '\r' || c == '\v' || c == 0x85 /* Unicode CR+LF */);
+}
+
 GIT_INLINE(bool) git__iswildcard(int c)
 {
 	return (c == '*' || c == '?' || c == '[');