Makefile.am, configure.in:

  Enable "make distcheck" to work


configure.in:
  Enable "make distcheck" to work
Docs/Makefile.am:
  Enable "make distcheck" to work
Makefile.am:
  Enable "make distcheck" to work
client/Makefile.am:
  Enable "make distcheck" to work
cmd-line-utils/libedit/Makefile.am:
  Enable "make distcheck" to work
include/Makefile.am:
  Enable "make distcheck" to work
libmysql/Makefile.am:
  Enable "make distcheck" to work
libmysql_r/Makefile.am:
  Enable "make distcheck" to work
libmysqld/Makefile.am:
  Enable "make distcheck" to work
libmysqld/examples/Makefile.am:
  Enable "make distcheck" to work
mysql-test/Makefile.am:
  Enable "make distcheck" to work
ndb/docs/Makefile.am:
  Enable "make distcheck" to work
netware/Makefile.am:
  Enable "make distcheck" to work
pstack/Makefile.am:
  Enable "make distcheck" to work
scripts/Makefile.am:
  Enable "make distcheck" to work
sql-bench/Makefile.am:
  Enable "make distcheck" to work
sql/Makefile.am:
  Enable "make distcheck" to work
sql/share/Makefile.am:
  Enable "make distcheck" to work
support-files/Makefile.am:
  Enable "make distcheck" to work

19 files changed, 111 insertions, 101 deletions

diff --git a/Docs/Makefile.am b/Docs/Makefile.am
index b1f69381774..685eaeef7d1 100644
--- a/Docs/Makefile.am
+++ b/Docs/Makefile.am
@@ -18,11 +18,11 @@ noinst_SCRIPTS =	Support/generate-text-files.pl
 
 EXTRA_DIST =		$(noinst_SCRIPTS) mysql.info INSTALL-BINARY
 
-all:			txt_files
-
-txt_files:		../INSTALL-SOURCE ../INSTALL-WIN-SOURCE ../EXCEPTIONS-CLIENT \
+TXT_FILES=		../INSTALL-SOURCE ../INSTALL-WIN-SOURCE ../EXCEPTIONS-CLIENT \
 			INSTALL-BINARY ../support-files/MacOSX/ReadMe.txt
 
+all-local:		$(TXT_FILES)
+
 # make sure that "make install" installs the info page, too
 # automake only seems to take care of this automatically,
 # if we're building the info page from texi directly.
@@ -30,28 +30,32 @@ install-data-hook:	mysql.info
 	$(mkinstalldirs) $(DESTDIR)$(infodir)
 	$(INSTALL_DATA) $(srcdir)/mysql.info $(DESTDIR)$(infodir)
 
-CLEAN_FILES:		$(txt_files)
-	touch $(txt_files)
+uninstall-local:
+	@RM@ -f $(DESTDIR)$(infodir)/mysql.info
+
+# This target is not used in builds, just for convinience
+CLEAN_FILES:		$(TXT_FILES)
+	touch $(TXT_FILES)
 
 GT = $(srcdir)/Support/generate-text-files.pl
 
 ../INSTALL-SOURCE:	mysql.info $(GT)
-	perl -w $(GT) mysql.info "installing-source" "windows-source-build" > $@
+	perl -w $(GT) $< "installing-source" "windows-source-build" > $@
 
 ../INSTALL-WIN-SOURCE:	mysql.info $(GT)
-	perl -w $(GT) mysql.info "windows-source-build" "post-installation" > $@
+	perl -w $(GT) $< "windows-source-build" "post-installation" > $@
 
 # We put the description for the binary installation here so that
 # people who download source wont have to see it. It is moved up to
 # the toplevel by the script that makes the binary tar files.
 INSTALL-BINARY:	mysql.info $(GT)
-	perl -w $(GT) mysql.info "installing-binary" "installing-source" > $@
+	perl -w $(GT) $< "installing-binary" "installing-source" > $@
 
 ../EXCEPTIONS-CLIENT: mysql.info $(GT)
-	perl -w $(GT) mysql.info "mysql-floss-license-exception" "function-index" > $@
+	perl -w $(GT) $< "mysql-floss-license-exception" "function-index" > $@
 
 ../support-files/MacOSX/ReadMe.txt:	mysql.info $(GT)
-	perl -w $(GT) mysql.info "mac-os-x-installation" "netware-installation" > $@
+	perl -w $(GT) $< "mac-os-x-installation" "netware-installation" > $@
 
 # Don't update the files from bitkeeper
 %::SCCS/s.%
diff --git a/Makefile.am b/Makefile.am
index 9025251ff2a..7b397189aee 100644
--- a/Makefile.am
+++ b/Makefile.am
@@ -19,7 +19,8 @@
 AUTOMAKE_OPTIONS =	foreign
 
 # These are built from source in the Docs directory
-EXTRA_DIST =		INSTALL-SOURCE README COPYING EXCEPTIONS-CLIENT
+EXTRA_DIST =		INSTALL-SOURCE INSTALL-WIN-SOURCE \
+			README COPYING EXCEPTIONS-CLIENT
 SUBDIRS =		. include @docs_dirs@ @zlib_dir@ \
 			@readline_topdir@ sql-common \
 			@thread_dirs@ pstack \
@@ -34,16 +35,19 @@ DIST_SUBDIRS =		. include @docs_dirs@ zlib \
 			BUILD netware os2 @libmysqld_dirs@ \
 			@bench_dirs@ support-files @fs_dirs@ @tools_dirs@
 
-# Relink after clean
-linked_sources = linked_client_sources linked_server_sources \
-		 linked_libmysql_sources linked_libmysql_r_sources \
-		 linked_libmysqld_sources  linked_libmysqldex_sources \
+# Run these targets before any others, also make part of clean target,
+# to make sure we create new links after a clean.
+BUILT_SOURCES = linked_client_sources linked_server_sources \
+		 @linked_client_targets@ \
+		 @linked_libmysqld_targets@ \
 		 linked_include_sources @linked_netware_sources@
 
-CLEANFILES = $(linked_sources)
-
-# This is just so that the linking is done early.
-all-local: $(linked_sources)
+# The db.h file is a bit special, see note in "configure.in".
+# In the case we didn't compile with bdb, a dummy file is put
+# there, but will not be removed by the bdb make file becuase
+# it will never be called.
+CLEANFILES = $(BUILT_SOURCES) bdb/build_unix/db.h
+DISTCLEANFILES = ac_available_languages_fragment
 
 linked_include_sources:
 	cd include; $(MAKE) link_sources
@@ -73,13 +77,8 @@ linked_netware_sources:
 	cd @netware_dir@; $(MAKE) link_sources
 	echo timestamp > linked_netware_sources
 
-#avoid recursive make calls in sql directory
 linked_server_sources:
-	cd sql; rm -f mini_client_errors.c;\
-		@LN_CP_F@ ../libmysql/errmsg.c mini_client_errors.c;\
-		rm -f pack.c;@LN_CP_F@ ../sql-common/pack.c pack.c;\
-		rm -f client.c;@LN_CP_F@ ../sql-common/client.c client.c;\
-		rm -f my_time.c;@LN_CP_F@ ../sql-common/my_time.c my_time.c
+	cd sql; $(MAKE) link_sources
 	echo timestamp > linked_server_sources
 
 # Create permission databases
@@ -91,7 +90,7 @@ bin-dist:		all
 
 # Remove BK's "SCCS" subdirectories from source distribution
 dist-hook:
-	rm -rf `find $(distdir) -type d -name SCCS`
+	rm -rf `find $(distdir) -type d -name SCCS -print`
 
 tags:
 	support-files/build-tags
diff --git a/client/Makefile.am b/client/Makefile.am
index 1e8851fb3b9..c0569d5fa6f 100644
--- a/client/Makefile.am
+++ b/client/Makefile.am
@@ -41,8 +41,8 @@ DEFS =			-DUNDEF_THREADS_HACK
 
 link_sources:
 	for f in $(sql_src) ; do \
-	  rm -f $(srcdir)/$$f; \
-	  @LN_CP_F@ $(top_srcdir)/sql/$$f $(srcdir)/$$f; \
+	  rm -f $$f; \
+	  @LN_CP_F@ $(top_srcdir)/sql/$$f $$f; \
         done;
 
 # Don't update the files from bitkeeper
diff --git a/cmd-line-utils/libedit/Makefile.am b/cmd-line-utils/libedit/Makefile.am
index af1bf8b2c97..ae6755f1c5c 100644
--- a/cmd-line-utils/libedit/Makefile.am
+++ b/cmd-line-utils/libedit/Makefile.am
@@ -2,8 +2,8 @@
 # Makefile for the GNU readline library.
 # Copyright (C) 1994,1996,1997 Free Software Foundation, Inc.
 
-ASRC=vi.c emacs.c common.c
-AHDR=vi.h emacs.h common.h
+ASRC =			$(srcdir)/vi.c $(srcdir)/emacs.c $(srcdir)/common.c
+AHDR =			vi.h emacs.h common.h
 
 INCLUDES =		-I$(top_builddir)/include -I$(top_srcdir)/include \
 			-I$(srcdir)/../.. -I..
@@ -42,16 +42,16 @@ SUFFIXES = .sh
 	$< > $@-t
 	@MV@ $@-t $@
 
-vi.h: vi.c makelist
-	sh ./makelist -h ./vi.c > $@.tmp && \
+vi.h: $(srcdir)/vi.c makelist
+	sh ./makelist -h $(srcdir)/vi.c > $@.tmp && \
 	mv $@.tmp $@
 
-emacs.h: emacs.c makelist
-	sh ./makelist -h ./emacs.c > $@.tmp && \
+emacs.h: $(srcdir)/emacs.c makelist
+	sh ./makelist -h $(srcdir)/emacs.c > $@.tmp && \
 	mv $@.tmp $@
 
-common.h: common.c makelist
-	sh ./makelist -h ./common.c > $@.tmp && \
+common.h: $(srcdir)/common.c makelist
+	sh ./makelist -h $(srcdir)/common.c > $@.tmp && \
 	mv $@.tmp $@
 
 help.c: ${ASRC} makelist
diff --git a/configure.in b/configure.in
index 97eb0cb0edf..bce2aaef302 100644
--- a/configure.in
+++ b/configure.in
@@ -37,7 +37,7 @@ romanian russian serbian slovak spanish swedish ukrainian"
 
 # Generate make rules for all error messages
 AVAILABLE_LANGUAGES_ERRORS=
-AVAILABLE_LANGUAGES_ERRORS_RULES=$srcdir/ac_available_languages_fragment
+AVAILABLE_LANGUAGES_ERRORS_RULES=ac_available_languages_fragment
 rm -f $AVAILABLE_LANGUAGES_ERRORS_RULES
 for i in $AVAILABLE_LANGUAGES
 do
@@ -2310,6 +2310,7 @@ then
     echo "Warning: extra-tools disabled because --enable-thread-safe-client wasn't used"
   else
     tools_dirs="tools"
+    AC_CONFIG_FILES(tools/Makefile)
   fi
 fi
 AC_SUBST(tools_dirs)
@@ -2320,9 +2321,12 @@ MYSQL_CHECK_VIO
 MYSQL_CHECK_OPENSSL
 
 libmysqld_dirs=
+linked_libmysqld_targets=
 if test "$with_embedded_server" = "yes"
 then
   libmysqld_dirs=libmysqld
+  linked_libmysqld_targets="linked_libmysqld_sources linked_libmysqldex_sources"
+  AC_CONFIG_FILES(libmysqld/Makefile libmysqld/examples/Makefile)
   # We can't build embedded library without building the server, because
   # we depend on libmysys, libmystrings, libmyisam, etc.
   with_server=yes
@@ -2331,6 +2335,7 @@ fi
 # mysql_config --libmysqld-libs will print out something like
 # -L/path/to/lib/mysql -lmysqld -lmyisam -lmysys -lmystrings -ldbug ...
 AC_SUBST([libmysqld_dirs])
+AC_SUBST([linked_libmysqld_targets])
 
 # Shall we build the docs?
 AC_ARG_WITH(docs,
@@ -2921,6 +2926,7 @@ if test "$THREAD_SAFE_CLIENT" != "no"
 then
   sql_client_dirs="libmysql_r $sql_client_dirs"
   linked_client_targets="$linked_client_targets linked_libmysql_r_sources"
+  AC_CONFIG_FILES(libmysql_r/Makefile)
   AC_DEFINE([THREAD_SAFE_CLIENT], [1], [Should be client be thread safe])
 fi
 
@@ -3275,12 +3281,11 @@ AC_CONFIG_FILES(Makefile extra/Makefile mysys/Makefile dnl
  myisam/Makefile myisammrg/Makefile dnl
  os2/Makefile os2/include/Makefile os2/include/sys/Makefile dnl
  man/Makefile BUILD/Makefile vio/Makefile dnl
- libmysql_r/Makefile libmysqld/Makefile libmysqld/examples/Makefile dnl
  libmysql/Makefile client/Makefile dnl
  pstack/Makefile pstack/aout/Makefile sql/Makefile sql/share/Makefile dnl
  sql-common/Makefile SSL/Makefile dnl
  dbug/Makefile scripts/Makefile dnl
- include/Makefile sql-bench/Makefile tools/Makefile dnl
+ include/Makefile sql-bench/Makefile dnl
  tests/Makefile Docs/Makefile support-files/Makefile dnl
  support-files/MacOSX/Makefile mysql-test/Makefile dnl
  netware/Makefile dnl
diff --git a/include/Makefile.am b/include/Makefile.am
index 0c845900a4f..3fa7b04d69a 100644
--- a/include/Makefile.am
+++ b/include/Makefile.am
@@ -38,23 +38,15 @@ SUPERCLEANFILES =	mysql_version.h my_config.h
 # Some include files that may be moved and patched by configure
 DISTCLEANFILES =	sched.h $(SUPERCLEANFILES)
 
-clean:
+clean-local:
 	$(RM) -fr readline
-distclean:
+distclean-local:
 	$(RM) -fr readline
 
-all-local:		my_config.h
-
-# Since we include my_config.h it better exist from the beginning
-link_sources:
-	$(CP) ../config.h my_config.h
-	-$(RM) -fr readline
-	@readline_h_ln_cmd@
-
-# Keep automake happy 
-
 my_config.h: ../config.h
 	$(CP) ../config.h my_config.h
+
+link_sources:
 	-$(RM) -fr readline
 	@readline_h_ln_cmd@
 
diff --git a/libmysql/Makefile.am b/libmysql/Makefile.am
index 4bd9eddafb0..8e76d0f125d 100644
--- a/libmysql/Makefile.am
+++ b/libmysql/Makefile.am
@@ -43,33 +43,33 @@ link_sources:
 	  vs=`echo $(vio_objects) | sed "s;\.lo;.c;g"`; \
 	  scs=`echo $(sql_cmn_objects) | sed "s;\.lo;.c;g"`; \
 	  for f in $$ss; do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../strings/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/strings/$$f $$f; \
 	  done; \
 	  for f in $$vs $(vioheaders); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../vio/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/vio/$$f $$f; \
 	  done; \
 	  for f in $$scs; do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../sql-common/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/sql-common/$$f $$f; \
 	  done; \
 	  for f in $(mystringsextra); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../strings/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/strings/$$f $$f; \
 	  done; \
 	  for f in $$ds; do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../dbug/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/dbug/$$f $$f; \
 	  done; \
 	  for f in $$ms $(mysysheaders); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../mysys/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/mysys/$$f $$f; \
 	  done; \
-	  rm -f $(srcdir)/net.c; \
-	  @LN_CP_F@ $(srcdir)/../sql/net_serv.cc $(srcdir)/net.c ; \
-	  rm -f $(srcdir)/password.c; \
-	  @LN_CP_F@ $(srcdir)/../sql/password.c $(srcdir)/password.c
+	  rm -f net.c; \
+	  @LN_CP_F@ $(top_srcdir)/sql/net_serv.cc net.c ; \
+	  rm -f password.c; \
+	  @LN_CP_F@ $(top_srcdir)/sql/password.c password.c
 
 # This part requires GNUmake
 #
diff --git a/libmysql_r/Makefile.am b/libmysql_r/Makefile.am
index a76ef675189..f7cf00321cb 100644
--- a/libmysql_r/Makefile.am
+++ b/libmysql_r/Makefile.am
@@ -41,6 +41,6 @@ libmysqlclient_r_la_LDFLAGS = $(target_ldflags)
 link_sources:
 	set -x; \
 	for f in `cd $(libmysql_dir) && echo *.[ch]`; do \
-	  rm -f $(srcdir)/$$f; \
-	  @LN_CP_F@ $(libmysql_dir)/$$f $(srcdir)/$$f; \
+	  rm -f $$f; \
+	  @LN_CP_F@ $(libmysql_dir)/$$f $$f; \
 	done
diff --git a/libmysqld/Makefile.am b/libmysqld/Makefile.am
index f4e9d4e6b39..d6f68047296 100644
--- a/libmysqld/Makefile.am
+++ b/libmysqld/Makefile.am
@@ -122,19 +122,19 @@ endif
 link_sources:
 	  set -x; \
 	  for f in $(sqlsources); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../sql/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/sql/$$f $$f; \
 	  done; \
 	  for f in $(libmysqlsources); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../libmysql/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/libmysql/$$f $$f; \
 	  done; \
 	  for f in $(sqlexamplessources); do \
-	    rm -f $(srcdir)/$$f; \
-	    @LN_CP_F@ $(srcdir)/../sql/examples/$$f $(srcdir)/$$f; \
+	    rm -f $$f; \
+	    @LN_CP_F@ $(top_srcdir)/sql/examples/$$f $$f; \
 	  done; \
-	  rm -f $(srcdir)/client_settings.h; \
-	  @LN_CP_F@ $(srcdir)/../libmysql/client_settings.h $(srcdir)/client_settings.h;
+	  rm -f client_settings.h; \
+	  @LN_CP_F@ $(top_srcdir)/libmysql/client_settings.h client_settings.h
 
 
 clean-local:
diff --git a/libmysqld/examples/Makefile.am b/libmysqld/examples/Makefile.am
index d19023c100f..588a6153a3b 100644
--- a/libmysqld/examples/Makefile.am
+++ b/libmysqld/examples/Makefile.am
@@ -20,14 +20,15 @@ client_sources =	$(mysqltest_embedded_SOURCES) $(mysql_SOURCES)
 tests_sources= $(mysql_client_test_embedded_SOURCES)
 
 link_sources:
+	set -x; \
 	for f in $(client_sources); do \
-	  rm -f $(srcdir)/$$f; \
-	  @LN_CP_F@ $(srcdir)/../../client/$$f $(srcdir)/$$f; \
-	done;
+	  rm -f $$f; \
+	  @LN_CP_F@ $(top_srcdir)/client/$$f $$f; \
+	done; \
 	for f in $(tests_sources); do \
-	  rm -f $(srcdir)/$$f; \
-	  @LN_CP_F@ $(srcdir)/../../tests/$$f $(srcdir)/$$f; \
-	done;
+	  rm -f $$f; \
+	  @LN_CP_F@ $(top_srcdir)/tests/$$f $$f; \
+	done
 
 DEFS = 		-DEMBEDDED_LIBRARY
 INCLUDES =	@MT_INCLUDES@ \
@@ -48,7 +49,7 @@ mysql_LDADD = @readline_link@ @TERMCAP_LIB@ $(LDADD)
 mysql_client_test_embedded_LINK = $(CXXLINK)
 mysql_client_test_embedded_SOURCES =	mysql_client_test.c
 
-clean:
+clean-local:
 	rm -f $(client_sources)
 	rm -f $(tests_sources)
 
diff --git a/mysql-test/Makefile.am b/mysql-test/Makefile.am
index e7abcd3fc95..f2a780cc550 100644
--- a/mysql-test/Makefile.am
+++ b/mysql-test/Makefile.am
@@ -82,6 +82,9 @@ install-data-local:
 	$(INSTALL_DATA) $(srcdir)/lib/init_db.sql $(DESTDIR)$(testdir)/lib
 	$(INSTALL_DATA) $(srcdir)/lib/*.pl $(DESTDIR)$(testdir)/lib
 
+uninstall-local:
+	@RM@ -f -r $(DESTDIR)$(testdir)
+
 std_data/client-key.pem:
 	@CP@ $(top_srcdir)/SSL/$(@F) $(srcdir)/std_data
 std_data/client-cert.pem:
diff --git a/ndb/docs/Makefile.am b/ndb/docs/Makefile.am
index 1399ce3b6a5..9b7ec213e26 100644
--- a/ndb/docs/Makefile.am
+++ b/ndb/docs/Makefile.am
@@ -1,14 +1,12 @@
 DOXYDIR = doxygen
 noinst_HEADERS = $(DOXYDIR)/predoxy.pl $(DOXYDIR)/postdoxy.pl $(DOXYDIR)/Doxyfile.ndbapi $(DOXYDIR)/Doxyfile.mgmapi $(DOXYDIR)/header.ndbapi.tex $(DOXYDIR)/header.mgmapi.tex
 
-all: 	do-check ndbapidoc mgmapidoc
-
 DOXYTMP =	.doxytmp
 DOXYOUT =	.doxyout
 
 NDB_RELEASE = @NDB_VERSION_MAJOR@.@NDB_VERSION_MINOR@.@NDB_VERSION_BUILD@-@NDB_VERSION_STATUS@
 
-clean:
+clean-local:
 	rm -rf ndbapi.pdf ndbapi.html mgmapi.pdf mgmapi.html
 	rm -rf $(DOXYTMP) $(DOXYOUT)
 
diff --git a/netware/Makefile.am b/netware/Makefile.am
index aeb93d1575d..0588e6b1ade 100644
--- a/netware/Makefile.am
+++ b/netware/Makefile.am
@@ -42,10 +42,10 @@ netware_build_files =           client/mysql.def client/mysqladmin.def \
 link_sources:
 	set -x; \
 	for f in $(netware_build_files); do \
-	  rm -f $(srcdir)/../$$f; \
+	  rm -f ../$$f; \
 	  org=`echo $$f | sed -e 's/.*\/\(.*\)/\1/g'`; \
-	  @LN_CP_F@ $(srcdir)/$$org $(srcdir)/../$$f; \
-	done;
+	  @LN_CP_F@ $(srcdir)/$$org ../$$f; \
+	done
 else
 EXTRA_DIST=	comp_err.def init_db.sql install_test_db.ncf \
 		isamchk.def isamlog.def libmysql.def libmysql.imp \
diff --git a/pstack/Makefile.am b/pstack/Makefile.am
index 77f84d212cd..20d5d8314ce 100644
--- a/pstack/Makefile.am
+++ b/pstack/Makefile.am
@@ -20,7 +20,7 @@
 #
 
 SUBDIRS =		aout
-INCLUDES =		-I$(top_srcdir)/include
+INCLUDES =		-I$(top_builddir)/include -I$(top_srcdir)/include
 noinst_HEADERS =	bucomm.h debug.h ieee.h budbg.h demangle.h \
 			linuxthreads.h pstack.h pstacktrace.h
 SRC=			bucomm.c filemode.c linuxthreads.c rddbg.c \
diff --git a/scripts/Makefile.am b/scripts/Makefile.am
index 27b42314273..30ba75c551d 100644
--- a/scripts/Makefile.am
+++ b/scripts/Makefile.am
@@ -85,12 +85,13 @@ CLEANFILES =		@server_scripts@ \
 			mysql_find_rows \
 			mysqlhotcopy \
 			mysqldumpslow \
+			mysql_explain_log \
+			mysql_tableinfo \
 			mysqld_multi \
 			make_win_src_distribution \
-			make_win_binary_distribution \
 			mysql_create_system_tables
 
-SUPERCLEANFILES =	mysqlbug
+DISTCLEANFILES =	mysqlbug
 
 # We want the right version and configure comand line in mysqlbug
 mysqlbug: ${top_builddir}/config.status mysqlbug.sh
diff --git a/sql-bench/Makefile.am b/sql-bench/Makefile.am
index 579a2a9f7fe..12f3d5550b3 100644
--- a/sql-bench/Makefile.am
+++ b/sql-bench/Makefile.am
@@ -60,6 +60,8 @@ install-data-local:
 	for i in $(srcdir)/limits/*.* ; do $(INSTALL_DATA) $$i $(DESTDIR)$(benchdir)/limits; done
 	for i in $(srcdir)/Comments/*.* ; do $(INSTALL_DATA) $$i $(DESTDIR)$(benchdir)/Comments; done
 
+uninstall-local:
+	@RM@ -f -r $(DESTDIR)$(benchdir)
 
 SUFFIXES = .sh
 
diff --git a/sql/Makefile.am b/sql/Makefile.am
index ea7cea9c7b9..218cf5dbca5 100644
--- a/sql/Makefile.am
+++ b/sql/Makefile.am
@@ -111,17 +111,17 @@ AM_YFLAGS =		-d
 
 mysql_tzinfo_to_sql.cc:
 	rm -f mysql_tzinfo_to_sql.cc
-	@LN_CP_F@ tztime.cc mysql_tzinfo_to_sql.cc
+	@LN_CP_F@ $(srcdir)/tztime.cc mysql_tzinfo_to_sql.cc
 
 link_sources: mysql_tzinfo_to_sql.cc
 	rm -f mini_client_errors.c
-	@LN_CP_F@ ../libmysql/errmsg.c mini_client_errors.c
+	@LN_CP_F@ $(top_srcdir)/libmysql/errmsg.c mini_client_errors.c
 	rm -f pack.c
-	@LN_CP_F@ ../sql-common/pack.c pack.c
+	@LN_CP_F@ $(top_srcdir)/sql-common/pack.c pack.c
 	rm -f client.c
-	@LN_CP_F@ ../sql-common/client.c client.c
+	@LN_CP_F@ $(top_srcdir)/sql-common/client.c client.c
 	rm -f my_time.c
-	@LN_CP_F@ ../sql-common/my_time.c my_time.c
+	@LN_CP_F@ $(top_srcdir)/sql-common/my_time.c my_time.c
 
 mysql_tzinfo_to_sql.o:	$(mysql_tzinfo_to_sql_SOURCES)
 			$(CXXCOMPILE) -c $(INCLUDES) -DTZINFO2SQL $<
@@ -145,7 +145,7 @@ lex_hash.h:	gen_lex_hash$(EXEEXT)
 udf_example.so:	udf_example.cc
 		$(CXXCOMPILE) -shared -o $@ $<
 
-distclean:
+distclean-local:
 		rm -f lex_hash.h
 
 # Don't update the files from bitkeeper
diff --git a/sql/share/Makefile.am b/sql/share/Makefile.am
index f0207fdef03..3b13d73e8da 100644
--- a/sql/share/Makefile.am
+++ b/sql/share/Makefile.am
@@ -43,6 +43,13 @@ install-data-local:
 	$(INSTALL_DATA) $(srcdir)/charsets/README $(DESTDIR)$(pkgdatadir)/charsets/README
 	$(INSTALL_DATA) $(srcdir)/charsets/*.xml $(DESTDIR)$(pkgdatadir)/charsets
 
+# FIXME maybe shouldn't remove, could be needed by other installation?
+uninstall-local:
+	@RM@ -f -r $(DESTDIR)$(pkgdatadir)
+
+# Do nothing
+link_sources:
+
 fix_errors:
 	for lang in @AVAILABLE_LANGUAGES@; \
 	do \
diff --git a/support-files/Makefile.am b/support-files/Makefile.am
index 972d1dc7038..26d51438a1b 100644
--- a/support-files/Makefile.am
+++ b/support-files/Makefile.am
@@ -107,7 +107,5 @@ SUFFIXES = .sh
 	$< > $@-t
 	@MV@ $@-t $@
 
-all:	binary-configure
-
 # Don't update the files from bitkeeper
 %::SCCS/s.%