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/**
* Copyright (C) 2018-present MongoDB, Inc.
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the Server Side Public License, version 1,
* as published by MongoDB, Inc.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* Server Side Public License for more details.
*
* You should have received a copy of the Server Side Public License
* along with this program. If not, see
* <http://www.mongodb.com/licensing/server-side-public-license>.
*
* As a special exception, the copyright holders give permission to link the
* code of portions of this program with the OpenSSL library under certain
* conditions as described in each individual source file and distribute
* linked combinations including the program with the OpenSSL library. You
* must comply with the Server Side Public License in all respects for
* all of the code used other than as permitted herein. If you modify file(s)
* with this exception, you may extend this exception to your version of the
* file(s), but you are not obligated to do so. If you do not wish to do so,
* delete this exception statement from your version. If you delete this
* exception statement from all source files in the program, then also delete
* it in the license file.
*/
#define MONGO_LOGV2_DEFAULT_COMPONENT ::mongo::logv2::LogComponent::kCommand
#include "mongo/platform/basic.h"
#include "mongo/db/auth/authorization_checks.h"
#include "mongo/db/auth/authorization_session.h"
#include "mongo/db/catalog/collection_catalog.h"
#include "mongo/db/catalog/collection_catalog_helper.h"
#include "mongo/db/catalog/database.h"
#include "mongo/db/catalog/health_log.h"
#include "mongo/db/commands.h"
#include "mongo/db/commands/test_commands_enabled.h"
#include "mongo/db/concurrency/write_conflict_exception.h"
#include "mongo/db/db_raii.h"
#include "mongo/db/jsobj.h"
#include "mongo/db/operation_context.h"
#include "mongo/db/repl/dbcheck.h"
#include "mongo/db/repl/oplog.h"
#include "mongo/db/repl/optime.h"
#include "mongo/db/write_concern_options.h"
#include "mongo/idl/command_generic_argument.h"
#include "mongo/util/background.h"
#include "mongo/logv2/log.h"
namespace mongo {
namespace {
repl::OpTime _logOp(OperationContext* opCtx,
const NamespaceString& nss,
const boost::optional<UUID>& uuid,
const BSONObj& obj) {
repl::MutableOplogEntry oplogEntry;
oplogEntry.setOpType(repl::OpTypeEnum::kCommand);
oplogEntry.setNss(nss);
if (uuid) {
oplogEntry.setUuid(*uuid);
}
oplogEntry.setObject(obj);
AutoGetOplog oplogWrite(opCtx, OplogAccessMode::kWrite);
return writeConflictRetry(
opCtx, "dbCheck oplog entry", NamespaceString::kRsOplogNamespace.ns(), [&] {
auto const clockSource = opCtx->getServiceContext()->getFastClockSource();
oplogEntry.setWallClockTime(clockSource->now());
WriteUnitOfWork uow(opCtx);
repl::OpTime result = repl::logOp(opCtx, &oplogEntry);
uow.commit();
return result;
});
}
/**
* RAII-style class, which logs dbCheck start and stop events in the healthlog and replicates them.
*/
class DbCheckStartAndStopLogger {
public:
DbCheckStartAndStopLogger(OperationContext* opCtx) : _opCtx(opCtx) {
try {
const auto healthLogEntry = dbCheckHealthLogEntry(boost::none /*nss*/,
SeverityEnum::Info,
"",
OplogEntriesEnum::Start,
boost::none /*data*/
);
HealthLog::get(_opCtx->getServiceContext()).log(*healthLogEntry);
DbCheckOplogStartStop oplogEntry;
const auto nss = NamespaceString("admin.$cmd");
oplogEntry.setNss(nss);
oplogEntry.setType(OplogEntriesEnum::Start);
_logOp(_opCtx, nss, boost::none /*uuid*/, oplogEntry.toBSON());
} catch (const DBException&) {
LOGV2(6202200, "Could not log start event");
}
}
~DbCheckStartAndStopLogger() {
try {
DbCheckOplogStartStop oplogEntry;
const auto nss = NamespaceString("admin.$cmd");
oplogEntry.setNss(nss);
oplogEntry.setType(OplogEntriesEnum::Stop);
_logOp(_opCtx, nss, boost::none /*uuid*/, oplogEntry.toBSON());
const auto healthLogEntry = dbCheckHealthLogEntry(boost::none /*nss*/,
SeverityEnum::Info,
"",
OplogEntriesEnum::Stop,
boost::none /*data*/
);
HealthLog::get(_opCtx->getServiceContext()).log(*healthLogEntry);
} catch (const DBException&) {
LOGV2(6202201, "Could not log stop event");
}
}
private:
OperationContext* _opCtx;
};
/**
* All the information needed to run dbCheck on a single collection.
*/
struct DbCheckCollectionInfo {
NamespaceString nss;
BSONKey start;
BSONKey end;
int64_t maxCount;
int64_t maxSize;
int64_t maxRate;
int64_t maxDocsPerBatch;
int64_t maxBytesPerBatch;
int64_t maxBatchTimeMillis;
bool snapshotRead;
WriteConcernOptions writeConcern;
};
/**
* A run of dbCheck consists of a series of collections.
*/
using DbCheckRun = std::vector<DbCheckCollectionInfo>;
std::unique_ptr<DbCheckRun> singleCollectionRun(OperationContext* opCtx,
const std::string& dbName,
const DbCheckSingleInvocation& invocation) {
NamespaceString nss(dbName, invocation.getColl());
AutoGetCollectionForRead agc(opCtx, nss);
uassert(ErrorCodes::NamespaceNotFound,
"Collection " + invocation.getColl() + " not found",
agc.getCollection());
uassert(40619,
"Cannot run dbCheck on " + nss.toString() + " because it is not replicated",
nss.isReplicated());
const auto start = invocation.getMinKey();
const auto end = invocation.getMaxKey();
const auto maxCount = invocation.getMaxCount();
const auto maxSize = invocation.getMaxSize();
const auto maxRate = invocation.getMaxCountPerSecond();
const auto maxDocsPerBatch = invocation.getMaxDocsPerBatch();
const auto maxBytesPerBatch = invocation.getMaxBytesPerBatch();
const auto maxBatchTimeMillis = invocation.getMaxBatchTimeMillis();
const auto info = DbCheckCollectionInfo{nss,
start,
end,
maxCount,
maxSize,
maxRate,
maxDocsPerBatch,
maxBytesPerBatch,
maxBatchTimeMillis,
invocation.getSnapshotRead(),
invocation.getBatchWriteConcern()};
auto result = std::make_unique<DbCheckRun>();
result->push_back(info);
return result;
}
std::unique_ptr<DbCheckRun> fullDatabaseRun(OperationContext* opCtx,
const std::string& dbName,
const DbCheckAllInvocation& invocation) {
uassert(
ErrorCodes::InvalidNamespace, "Cannot run dbCheck on local database", dbName != "local");
AutoGetDb agd(opCtx, StringData(dbName), MODE_IS);
uassert(ErrorCodes::NamespaceNotFound, "Database " + dbName + " not found", agd.getDb());
const int64_t max = std::numeric_limits<int64_t>::max();
const auto rate = invocation.getMaxCountPerSecond();
const auto maxDocsPerBatch = invocation.getMaxDocsPerBatch();
const auto maxBytesPerBatch = invocation.getMaxBytesPerBatch();
const auto maxBatchTimeMillis = invocation.getMaxBatchTimeMillis();
auto result = std::make_unique<DbCheckRun>();
auto perCollectionWork = [&](const CollectionPtr& coll) {
if (!coll->ns().isReplicated()) {
return true;
}
DbCheckCollectionInfo info{coll->ns(),
BSONKey::min(),
BSONKey::max(),
max,
max,
rate,
maxDocsPerBatch,
maxBytesPerBatch,
maxBatchTimeMillis,
invocation.getSnapshotRead(),
invocation.getBatchWriteConcern()};
result->push_back(info);
return true;
};
// TODO SERVER-63353: Change dbcheck command to use TenantDatabaseName
mongo::catalog::forEachCollectionFromDb(
opCtx, TenantDatabaseName(boost::none, dbName), MODE_IS, perCollectionWork);
return result;
}
/**
* Factory function for producing DbCheckRun's from command objects.
*/
std::unique_ptr<DbCheckRun> getRun(OperationContext* opCtx,
const std::string& dbName,
const BSONObj& obj) {
BSONObjBuilder builder;
// Get rid of generic command fields.
for (const auto& elem : obj) {
if (!isGenericArgument(elem.fieldNameStringData())) {
builder.append(elem);
}
}
BSONObj toParse = builder.obj();
// If the dbCheck argument is a string, this is the per-collection form.
if (toParse["dbCheck"].type() == BSONType::String) {
return singleCollectionRun(
opCtx, dbName, DbCheckSingleInvocation::parse(IDLParserErrorContext(""), toParse));
} else {
// Otherwise, it's the database-wide form.
return fullDatabaseRun(
opCtx, dbName, DbCheckAllInvocation::parse(IDLParserErrorContext(""), toParse));
}
}
/**
* The BackgroundJob in which dbCheck actually executes on the primary.
*/
class DbCheckJob : public BackgroundJob {
public:
DbCheckJob(const StringData& dbName, std::unique_ptr<DbCheckRun> run)
: BackgroundJob(true), _done(false), _dbName(dbName.toString()), _run(std::move(run)) {}
protected:
virtual std::string name() const override {
return "dbCheck";
}
virtual void run() override {
// Every dbCheck runs in its own client.
ThreadClient tc(name(), getGlobalServiceContext());
{
stdx::lock_guard<Client> lk(*tc.get());
tc.get()->setSystemOperationKillableByStepdown(lk);
}
auto uniqueOpCtx = tc->makeOperationContext();
auto opCtx = uniqueOpCtx.get();
DbCheckStartAndStopLogger startStop(opCtx);
for (const auto& coll : *_run) {
try {
_doCollection(opCtx, coll);
} catch (const DBException& e) {
auto logEntry = dbCheckErrorHealthLogEntry(
coll.nss, "dbCheck failed", OplogEntriesEnum::Batch, e.toStatus());
HealthLog::get(Client::getCurrent()->getServiceContext()).log(*logEntry);
return;
}
if (_done) {
LOGV2(20451, "dbCheck terminated due to stepdown");
return;
}
}
}
private:
void _doCollection(OperationContext* opCtx, const DbCheckCollectionInfo& info) {
if (_done) {
return;
}
const std::string curOpMessage = "Scanning namespace " + info.nss.toString();
ProgressMeterHolder progress;
{
AutoGetCollection coll(opCtx, info.nss, MODE_IS);
if (coll) {
stdx::unique_lock<Client> lk(*opCtx->getClient());
progress.set(CurOp::get(opCtx)->setProgress_inlock(StringData(curOpMessage),
coll->numRecords(opCtx)));
} else {
const auto entry = dbCheckWarningHealthLogEntry(
info.nss,
"abandoning dbCheck batch because collection no longer exists",
OplogEntriesEnum::Batch,
Status(ErrorCodes::NamespaceNotFound, "collection not found"));
HealthLog::get(Client::getCurrent()->getServiceContext()).log(*entry);
return;
}
}
// Parameters for the hasher.
auto start = info.start;
bool reachedEnd = false;
// Make sure the totals over all of our batches don't exceed the provided limits.
int64_t totalBytesSeen = 0;
int64_t totalDocsSeen = 0;
// Limit the rate of the check.
using Clock = stdx::chrono::system_clock;
using TimePoint = stdx::chrono::time_point<Clock>;
TimePoint lastStart = Clock::now();
int64_t docsInCurrentInterval = 0;
do {
using namespace std::literals::chrono_literals;
if (Clock::now() - lastStart > 1s) {
lastStart = Clock::now();
docsInCurrentInterval = 0;
}
auto result =
_runBatch(opCtx, info, start, info.maxDocsPerBatch, info.maxBytesPerBatch);
if (_done) {
return;
}
if (!result.isOK()) {
bool retryable = false;
std::unique_ptr<HealthLogEntry> entry;
const auto code = result.getStatus().code();
if (code == ErrorCodes::LockTimeout) {
retryable = true;
entry = dbCheckWarningHealthLogEntry(
info.nss,
"retrying dbCheck batch after timeout due to lock unavailability",
OplogEntriesEnum::Batch,
result.getStatus());
} else if (code == ErrorCodes::SnapshotUnavailable) {
retryable = true;
entry = dbCheckWarningHealthLogEntry(
info.nss,
"retrying dbCheck batch after conflict with pending catalog operation",
OplogEntriesEnum::Batch,
result.getStatus());
} else if (code == ErrorCodes::NamespaceNotFound) {
entry = dbCheckWarningHealthLogEntry(
info.nss,
"abandoning dbCheck batch because collection no longer exists",
OplogEntriesEnum::Batch,
result.getStatus());
} else if (code == ErrorCodes::IndexNotFound) {
entry = dbCheckWarningHealthLogEntry(
info.nss,
"skipping dbCheck on collection because it is missing an _id index",
OplogEntriesEnum::Batch,
result.getStatus());
} else if (ErrorCodes::isA<ErrorCategory::NotPrimaryError>(code)) {
entry = dbCheckWarningHealthLogEntry(
info.nss,
"stopping dbCheck because node is no longer primary",
OplogEntriesEnum::Batch,
result.getStatus());
} else {
entry = dbCheckErrorHealthLogEntry(info.nss,
"dbCheck batch failed",
OplogEntriesEnum::Batch,
result.getStatus());
}
HealthLog::get(opCtx).log(*entry);
if (retryable) {
continue;
}
return;
}
const auto stats = result.getValue();
_batchesProcessed++;
auto entry = dbCheckBatchEntry(info.nss,
stats.nDocs,
stats.nBytes,
stats.md5,
stats.md5,
start,
stats.lastKey,
stats.readTimestamp,
stats.time);
if (kDebugBuild || entry->getSeverity() != SeverityEnum::Info ||
(_batchesProcessed % gDbCheckHealthLogEveryNBatches.load() == 0)) {
// On debug builds, health-log every batch result; on release builds, health-log
// every N batches.
HealthLog::get(opCtx).log(*entry);
}
WriteConcernResult unused;
auto status = waitForWriteConcern(opCtx, stats.time, info.writeConcern, &unused);
if (!status.isOK()) {
auto entry = dbCheckWarningHealthLogEntry(info.nss,
"dbCheck failed waiting for writeConcern",
OplogEntriesEnum::Batch,
status);
HealthLog::get(opCtx).log(*entry);
}
start = stats.lastKey;
// Update our running totals.
totalDocsSeen += stats.nDocs;
totalBytesSeen += stats.nBytes;
docsInCurrentInterval += stats.nDocs;
progress.get()->hit(stats.nDocs);
// Check if we've exceeded any limits.
bool reachedLast = stats.lastKey >= info.end;
bool tooManyDocs = totalDocsSeen >= info.maxCount;
bool tooManyBytes = totalBytesSeen >= info.maxSize;
reachedEnd = reachedLast || tooManyDocs || tooManyBytes;
if (docsInCurrentInterval > info.maxRate && info.maxRate > 0) {
// If an extremely low max rate has been set (substantially smaller than the batch
// size) we might want to sleep for multiple seconds between batches.
int64_t timesExceeded = docsInCurrentInterval / info.maxRate;
stdx::this_thread::sleep_for(timesExceeded * 1s - (Clock::now() - lastStart));
}
} while (!reachedEnd);
progress.finished();
}
/**
* For organizing the results of batches.
*/
struct BatchStats {
int64_t nDocs;
int64_t nBytes;
BSONKey lastKey;
std::string md5;
repl::OpTime time;
boost::optional<Timestamp> readTimestamp;
};
// Set if the job cannot proceed.
bool _done;
std::string _dbName;
std::unique_ptr<DbCheckRun> _run;
StatusWith<BatchStats> _runBatch(OperationContext* opCtx,
const DbCheckCollectionInfo& info,
const BSONKey& first,
int64_t batchDocs,
int64_t batchBytes) {
auto lockMode = MODE_S;
if (info.snapshotRead) {
// Each batch will read at the latest no-overlap point, which is the all_durable
// timestamp on primaries. We assume that the history window on secondaries is always
// longer than the time it takes between starting and replicating a batch on the
// primary. Otherwise, the readTimestamp will not be available on a secondary by the
// time it processes the oplog entry.
lockMode = MODE_IS;
opCtx->recoveryUnit()->setTimestampReadSource(RecoveryUnit::ReadSource::kNoOverlap);
}
BatchStats result;
auto timeoutMs = Milliseconds(gDbCheckCollectionTryLockTimeoutMillis.load());
const auto initialBackoffMs =
Milliseconds(gDbCheckCollectionTryLockMinBackoffMillis.load());
auto backoffMs = initialBackoffMs;
for (int attempt = 1;; attempt++) {
try {
// Try to acquire collection lock with increasing timeout and bounded exponential
// backoff.
auto const lockDeadline = Date_t::now() + timeoutMs;
timeoutMs *= 2;
AutoGetCollection agc(opCtx,
info.nss,
lockMode,
AutoGetCollectionViewMode::kViewsForbidden,
lockDeadline);
if (_stepdownHasOccurred(opCtx, info.nss)) {
_done = true;
return Status(ErrorCodes::PrimarySteppedDown,
"dbCheck terminated due to stepdown");
}
const auto& collection =
CollectionCatalog::get(opCtx)->lookupCollectionByNamespace(opCtx, info.nss);
if (!collection) {
const auto msg = "Collection under dbCheck no longer exists";
return {ErrorCodes::NamespaceNotFound, msg};
}
auto readTimestamp = opCtx->recoveryUnit()->getPointInTimeReadTimestamp(opCtx);
auto minVisible = collection->getMinimumVisibleSnapshot();
if (readTimestamp && minVisible &&
*readTimestamp < *collection->getMinimumVisibleSnapshot()) {
return {ErrorCodes::SnapshotUnavailable,
str::stream() << "Unable to read from collection " << info.nss
<< " due to pending catalog changes"};
}
boost::optional<DbCheckHasher> hasher;
try {
hasher.emplace(opCtx,
collection,
first,
info.end,
std::min(batchDocs, info.maxCount),
std::min(batchBytes, info.maxSize));
} catch (const DBException& e) {
return e.toStatus();
}
const auto batchDeadline = Date_t::now() + Milliseconds(info.maxBatchTimeMillis);
Status status = hasher->hashAll(opCtx, batchDeadline);
if (!status.isOK()) {
return status;
}
std::string md5 = hasher->total();
DbCheckOplogBatch batch;
batch.setType(OplogEntriesEnum::Batch);
batch.setNss(info.nss);
batch.setMd5(md5);
batch.setMinKey(first);
batch.setMaxKey(BSONKey(hasher->lastKey()));
batch.setReadTimestamp(readTimestamp);
// Send information on this batch over the oplog.
result.time = _logOp(opCtx, info.nss, collection->uuid(), batch.toBSON());
result.readTimestamp = readTimestamp;
result.nDocs = hasher->docsSeen();
result.nBytes = hasher->bytesSeen();
result.lastKey = hasher->lastKey();
result.md5 = md5;
break;
} catch (const ExceptionFor<ErrorCodes::LockTimeout>& e) {
if (attempt > gDbCheckCollectionTryLockMaxAttempts.load()) {
return StatusWith<BatchStats>(e.code(),
"Unable to acquire the collection lock");
}
// Bounded exponential backoff between tryLocks.
opCtx->sleepFor(backoffMs);
const auto maxBackoffMillis =
Milliseconds(gDbCheckCollectionTryLockMaxBackoffMillis.load());
if (backoffMs < maxBackoffMillis) {
auto backoff = durationCount<Milliseconds>(backoffMs);
auto initialBackoff = durationCount<Milliseconds>(initialBackoffMs);
backoff *= initialBackoff;
backoffMs = Milliseconds(backoff);
}
if (backoffMs > maxBackoffMillis) {
backoffMs = maxBackoffMillis;
}
LOGV2_DEBUG(6175700,
1,
"Could not acquire collection lock, retrying",
"ns"_attr = info.nss.ns(),
"batchRangeMin"_attr = info.start.obj(),
"batchRangeMax"_attr = info.end.obj(),
"attempt"_attr = attempt,
"backoff"_attr = backoffMs);
}
}
return result;
}
/**
* Return `true` iff the primary the check is running on has stepped down.
*/
bool _stepdownHasOccurred(OperationContext* opCtx, const NamespaceString& nss) {
Status status = opCtx->checkForInterruptNoAssert();
if (!status.isOK()) {
return true;
}
auto coord = repl::ReplicationCoordinator::get(opCtx);
if (!coord->canAcceptWritesFor(opCtx, nss)) {
return true;
}
return false;
}
// Cumulative number of batches processed. Can wrap around; it's not guaranteed to be in
// lockstep with other replica set members.
unsigned int _batchesProcessed = 0;
};
/**
* The command, as run on the primary.
*/
class DbCheckCmd : public BasicCommand {
public:
DbCheckCmd() : BasicCommand("dbCheck") {}
AllowedOnSecondary secondaryAllowed(ServiceContext*) const override {
return AllowedOnSecondary::kNever;
}
bool maintenanceOk() const override {
return false;
}
virtual bool adminOnly() const {
return false;
}
virtual bool supportsWriteConcern(const BSONObj& cmd) const override {
return false;
}
std::string help() const override {
return "Validate replica set consistency.\n"
"Invoke with { dbCheck: <collection name/uuid>,\n"
" minKey: <first key, exclusive>,\n"
" maxKey: <last key, inclusive>,\n"
" maxCount: <max number of docs>,\n"
" maxSize: <max size of docs>,\n"
" maxCountPerSecond: <max rate in docs/sec>\n"
" maxDocsPerBatch: <max number of docs/batch>\n"
" maxBytesPerBatch: <try to keep a batch within max bytes/batch>\n"
" maxBatchTimeMillis: <max time processing a batch in milliseconds>\n"
" readTimestamp: <bool, read at a timestamp without strong locks> }\n"
"to check a collection.\n"
"Invoke with {dbCheck: 1} to check all collections in the database.";
}
virtual Status checkAuthForCommand(Client* client,
const std::string& dbname,
const BSONObj& cmdObj) const {
const bool isAuthorized =
AuthorizationSession::get(client)->isAuthorizedForActionsOnResource(
ResourcePattern::forAnyResource(), ActionType::dbCheck);
return isAuthorized ? Status::OK() : Status(ErrorCodes::Unauthorized, "Unauthorized");
}
virtual bool run(OperationContext* opCtx,
const std::string& dbname,
const BSONObj& cmdObj,
BSONObjBuilder& result) {
auto job = getRun(opCtx, dbname, cmdObj);
try {
(new DbCheckJob(dbname, std::move(job)))->go();
} catch (const DBException& e) {
result.append("ok", false);
result.append("err", e.toString());
return false;
}
result.append("ok", true);
return true;
}
} dbCheckCmd;
} // namespace
} // namespace mongo
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