1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
|
#!/usr/bin/perl
use strict;
use Switch;
use DBI;
use File::Temp;
use File::Find;
use File::Basename;
use Scalar::Util qw(looks_like_number);
if(scalar(@ARGV) != 2){
print STDERR "Incorrect number of arguments\n";
print STDERR "Correct usage is: perl ninka-wrapper <path to package file> <database name>\n";
exit 1;
}
my $path = $0;
$path =~ s/\/+[^\/]+$//;
if ($path eq "") {
$path = "./";
}
my ($pack, $db) = @ARGV;
my $dbh = DBI->connect("DBI:SQLite:dbname=$db", "", "", {RaiseError => 1})
or die $DBI::errstr;
$dbh->do("CREATE TABLE IF NOT EXISTS
comments (filename TEXT, path TEXT, container TEXT, content TEXT,
PRIMARY KEY(filename, path, container))");
$dbh->do("CREATE TABLE IF NOT EXISTS
sentences (filename TEXT, path TEXT, container TEXT, content TEXT,
PRIMARY KEY(filename, path, container))");
$dbh->do("CREATE TABLE IF NOT EXISTS
goodsents (filename TEXT, path TEXT, container TEXT, content TEXT,
PRIMARY KEY(filename, path, container))");
$dbh->do("CREATE TABLE IF NOT EXISTS
badsents (filename TEXT, path TEXT, container TEXT, content TEXT,
PRIMARY KEY(filename, path, container))");
$dbh->do("CREATE TABLE IF NOT EXISTS
senttoks (filename TEXT, path TEXT, container TEXT, content TEXT,
PRIMARY KEY(filename, path, container))");
$dbh->do("CREATE TABLE IF NOT EXISTS
licenses (filename TEXT, path TEXT, container TEXT, licenses TEXT,
num_found INT, lines INT, toks_ignored INT, toks_unmatched INT,
toks_unknown INT, tokens TEXT,
PRIMARY KEY(filename, path, container))");
my $tempdir = File::Temp->newdir();
my $dirname = $tempdir->dirname;
print "***** Extracting file [$pack] to temporary directory [$dirname] *****\n";
my $packext = getExtension($pack);
if ($packext eq ".bz2" || $packext eq ".gz") {
execute("tar -xvf '$pack' --directory '$dirname'");
} elsif ($packext eq ".jar" || $packext eq ".zip") {
execute("unzip -d $dirname $pack");
} else {
print "ninka-wrapper does not support packages with extension [$packext]\n";
}
my @files;
find(
sub { push @files, $File::Find::name unless -d; },
$dirname
);
print "***** Beginning Execution of Ninka *****\n";
foreach my $file (@files) {
print "Running ninka on file [$file]\n";
execute("perl ${path}/ninka.pl '$file'");
}
my @ninkafiles;
find(
sub {
my $ext = getExtension($File::Find::name);
if($ext =~ m/(comments|sentences|goodsent|badsent|senttok|license)$/){
push @ninkafiles, $File::Find::name;
}
},
$dirname
);
print "***** Entering Ninka Data into Database [$db] *****\n";
foreach my $file (@ninkafiles) {
my $filepath = dirname($file);
$filepath =~ s/$dirname//;
my $basefile = basename($file);
my $rootfile = removeExtension($basefile);
my $packname = basename($pack);
#Read entire file into a string
open (my $fh, '<', $file) or die "Can't open file $!";
my $filedata = do { local $/; <$fh> };
my $sth;
switch (getExtension($basefile)){
case ".comments" {
print "Inserting [$basefile] into table comments\n";
$sth = $dbh->prepare("INSERT INTO comments VALUES
('$rootfile', '$filepath', '$packname', ?)");
}
case ".sentences" {
print "Inserting [$basefile] into table sentences\n";
$sth = $dbh->prepare("INSERT INTO sentences VALUES
('$rootfile', '$filepath', '$packname', ?)");
}
case ".goodsent" {
print "Inserting [$basefile] into table goodsents\n";
$sth = $dbh->prepare("INSERT INTO goodsents VALUES
('$rootfile', '$filepath', '$packname', ?)");
}
case ".badsent" {
print "Inserting [$basefile] into table goodsents\n";
$sth = $dbh->prepare("INSERT INTO badsents VALUES
('$rootfile', '$filepath', '$packname', ?)");
}
case ".senttok" {
print "Inserting [$basefile] into table senttoks\n";
$sth = $dbh->prepare("INSERT INTO senttoks VALUES
('$rootfile', '$filepath', '$packname', ?)");
}
case ".license" {
print "Inserting [$basefile] into table licenses\n";
my @columns = parseLicenseData($filedata);
$sth = $dbh->prepare("INSERT INTO licenses VALUES
('$rootfile', '$filepath', '$packname', '$columns[0]', '$columns[1]',
'$columns[2]', '$columns[3]', '$columns[4]', '$columns[5]', '$columns[6]')");
}
}
$sth->bind_param(1, $filedata);
$sth->execute;
close($fh);
}
$dbh->disconnect;
sub parseLicenseData {
my ($data) = @_;
my @columns;
my @fields = split(';', $data);
if($fields[0] eq "NONE\n"){
@columns = '' x 7;
@columns[0] = 'NONE';
} else {
@columns = @fields;
}
return @columns;
}
sub getExtension {
my ($file) = @_;
my $filename = basename($file);
my ($ext) = $filename =~ /(\.[^.]+)$/;
return $ext;
}
sub removeExtension {
my ($file) = @_;
(my $filename = $file) =~ s/\.[^.]+$//;
return $filename;
}
sub execute {
my ($command) = @_;
my $output = `$command`;
my $status = ($? >> 8);
die "execution of [$command] failed: status [$status]\n" if ($status != 0);
return $output;
}
|
