"""Extract reference documentation from the NumPy source tree. """ import inspect import textwrap import re import pydoc from warnings import warn from collections import namedtuple from collections.abc import Callable, Mapping import copy import sys # TODO: Remove try-except when support for Python 3.7 is dropped try: from functools import cached_property except ImportError: # cached_property added in Python 3.8 cached_property = property def strip_blank_lines(l): "Remove leading and trailing blank lines from a list of lines" while l and not l[0].strip(): del l[0] while l and not l[-1].strip(): del l[-1] return l class Reader: """A line-based string reader.""" def __init__(self, data): """ Parameters ---------- data : str String with lines separated by '\\n'. """ if isinstance(data, list): self._str = data else: self._str = data.split("\n") # store string as list of lines self.reset() def __getitem__(self, n): return self._str[n] def reset(self): self._l = 0 # current line nr def read(self): if not self.eof(): out = self[self._l] self._l += 1 return out else: return "" def seek_next_non_empty_line(self): for l in self[self._l :]: if l.strip(): break else: self._l += 1 def eof(self): return self._l >= len(self._str) def read_to_condition(self, condition_func): start = self._l for line in self[start:]: if condition_func(line): return self[start : self._l] self._l += 1 if self.eof(): return self[start : self._l + 1] return [] def read_to_next_empty_line(self): self.seek_next_non_empty_line() def is_empty(line): return not line.strip() return self.read_to_condition(is_empty) def read_to_next_unindented_line(self): def is_unindented(line): return line.strip() and (len(line.lstrip()) == len(line)) return self.read_to_condition(is_unindented) def peek(self, n=0): if self._l + n < len(self._str): return self[self._l + n] else: return "" def is_empty(self): return not "".join(self._str).strip() class ParseError(Exception): def __str__(self): message = self.args[0] if hasattr(self, "docstring"): message = f"{message} in {self.docstring!r}" return message Parameter = namedtuple("Parameter", ["name", "type", "desc"]) class NumpyDocString(Mapping): """Parses a numpydoc string to an abstract representation Instances define a mapping from section title to structured data. """ sections = { "Signature": "", "Summary": [""], "Extended Summary": [], "Parameters": [], "Returns": [], "Yields": [], "Receives": [], "Raises": [], "Warns": [], "Other Parameters": [], "Attributes": [], "Methods": [], "See Also": [], "Notes": [], "Warnings": [], "References": "", "Examples": "", "index": {}, } def __init__(self, docstring, config=None): orig_docstring = docstring docstring = textwrap.dedent(docstring).split("\n") self._doc = Reader(docstring) self._parsed_data = copy.deepcopy(self.sections) try: self._parse() except ParseError as e: e.docstring = orig_docstring raise def __getitem__(self, key): return self._parsed_data[key] def __setitem__(self, key, val): if key not in self._parsed_data: self._error_location(f"Unknown section {key}", error=False) else: self._parsed_data[key] = val def __iter__(self): return iter(self._parsed_data) def __len__(self): return len(self._parsed_data) def _is_at_section(self): self._doc.seek_next_non_empty_line() if self._doc.eof(): return False l1 = self._doc.peek().strip() # e.g. Parameters if l1.startswith(".. index::"): return True l2 = self._doc.peek(1).strip() # ---------- or ========== if len(l2) >= 3 and (set(l2) in ({"-"}, {"="})) and len(l2) != len(l1): snip = "\n".join(self._doc._str[:2]) + "..." self._error_location( f"potentially wrong underline length... \n{l1} \n{l2} in \n{snip}", error=False, ) return l2.startswith("-" * len(l1)) or l2.startswith("=" * len(l1)) def _strip(self, doc): i = 0 j = 0 for i, line in enumerate(doc): if line.strip(): break for j, line in enumerate(doc[::-1]): if line.strip(): break return doc[i : len(doc) - j] def _read_to_next_section(self): section = self._doc.read_to_next_empty_line() while not self._is_at_section() and not self._doc.eof(): if not self._doc.peek(-1).strip(): # previous line was empty section += [""] section += self._doc.read_to_next_empty_line() return section def _read_sections(self): while not self._doc.eof(): data = self._read_to_next_section() name = data[0].strip() if name.startswith(".."): # index section yield name, data[1:] elif len(data) < 2: yield StopIteration else: yield name, self._strip(data[2:]) def _parse_param_list(self, content, single_element_is_type=False): content = dedent_lines(content) r = Reader(content) params = [] while not r.eof(): header = r.read().strip() if " : " in header: arg_name, arg_type = header.split(" : ", maxsplit=1) else: # NOTE: param line with single element should never have a # a " :" before the description line, so this should probably # warn. if header.endswith(" :"): header = header[:-2] if single_element_is_type: arg_name, arg_type = "", header else: arg_name, arg_type = header, "" desc = r.read_to_next_unindented_line() desc = dedent_lines(desc) desc = strip_blank_lines(desc) params.append(Parameter(arg_name, arg_type, desc)) return params # See also supports the following formats. # # # SPACE* COLON SPACE+ SPACE* # ( COMMA SPACE+ )+ (COMMA | PERIOD)? SPACE* # ( COMMA SPACE+ )* SPACE* COLON SPACE+ SPACE* # is one of # # COLON COLON BACKTICK BACKTICK # where # is a legal function name, and # is any nonempty sequence of word characters. # Examples: func_f1 :meth:`func_h1` :obj:`~baz.obj_r` :class:`class_j` # is a string describing the function. _role = r":(?P(py:)?\w+):" _funcbacktick = r"`(?P(?:~\w+\.)?[a-zA-Z0-9_\.-]+)`" _funcplain = r"(?P[a-zA-Z0-9_\.-]+)" _funcname = r"(" + _role + _funcbacktick + r"|" + _funcplain + r")" _funcnamenext = _funcname.replace("role", "rolenext") _funcnamenext = _funcnamenext.replace("name", "namenext") _description = r"(?P\s*:(\s+(?P\S+.*))?)?\s*$" _func_rgx = re.compile(r"^\s*" + _funcname + r"\s*") _line_rgx = re.compile( r"^\s*" + r"(?P" + _funcname # group for all function names + r"(?P([,]\s+" + _funcnamenext + r")*)" + r")" + r"(?P[,\.])?" # end of "allfuncs" + _description # Some function lists have a trailing comma (or period) '\s*' ) # Empty elements are replaced with '..' empty_description = ".." def _parse_see_also(self, content): """ func_name : Descriptive text continued text another_func_name : Descriptive text func_name1, func_name2, :meth:`func_name`, func_name3 """ content = dedent_lines(content) items = [] def parse_item_name(text): """Match ':role:`name`' or 'name'.""" m = self._func_rgx.match(text) if not m: self._error_location(f"Error parsing See Also entry {line!r}") role = m.group("role") name = m.group("name") if role else m.group("name2") return name, role, m.end() rest = [] for line in content: if not line.strip(): continue line_match = self._line_rgx.match(line) description = None if line_match: description = line_match.group("desc") if line_match.group("trailing") and description: self._error_location( "Unexpected comma or period after function list at index %d of " 'line "%s"' % (line_match.end("trailing"), line), error=False, ) if not description and line.startswith(" "): rest.append(line.strip()) elif line_match: funcs = [] text = line_match.group("allfuncs") while True: if not text.strip(): break name, role, match_end = parse_item_name(text) funcs.append((name, role)) text = text[match_end:].strip() if text and text[0] == ",": text = text[1:].strip() rest = list(filter(None, [description])) items.append((funcs, rest)) else: self._error_location(f"Error parsing See Also entry {line!r}") return items def _parse_index(self, section, content): """ .. index: default :refguide: something, else, and more """ def strip_each_in(lst): return [s.strip() for s in lst] out = {} section = section.split("::") if len(section) > 1: out["default"] = strip_each_in(section[1].split(","))[0] for line in content: line = line.split(":") if len(line) > 2: out[line[1]] = strip_each_in(line[2].split(",")) return out def _parse_summary(self): """Grab signature (if given) and summary""" if self._is_at_section(): return # If several signatures present, take the last one while True: summary = self._doc.read_to_next_empty_line() summary_str = " ".join([s.strip() for s in summary]).strip() compiled = re.compile(r"^([\w., ]+=)?\s*[\w\.]+\(.*\)$") if compiled.match(summary_str): self["Signature"] = summary_str if not self._is_at_section(): continue break if summary is not None: self["Summary"] = summary if not self._is_at_section(): self["Extended Summary"] = self._read_to_next_section() def _parse(self): self._doc.reset() self._parse_summary() sections = list(self._read_sections()) section_names = {section for section, content in sections} has_returns = "Returns" in section_names has_yields = "Yields" in section_names # We could do more tests, but we are not. Arbitrarily. if has_returns and has_yields: msg = "Docstring contains both a Returns and Yields section." raise ValueError(msg) if not has_yields and "Receives" in section_names: msg = "Docstring contains a Receives section but not Yields." raise ValueError(msg) for section, content in sections: if not section.startswith(".."): section = (s.capitalize() for s in section.split(" ")) section = " ".join(section) if self.get(section): self._error_location( "The section %s appears twice in %s" % (section, "\n".join(self._doc._str)) ) if section in ("Parameters", "Other Parameters", "Attributes", "Methods"): self[section] = self._parse_param_list(content) elif section in ("Returns", "Yields", "Raises", "Warns", "Receives"): self[section] = self._parse_param_list( content, single_element_is_type=True ) elif section.startswith(".. index::"): self["index"] = self._parse_index(section, content) elif section == "See Also": self["See Also"] = self._parse_see_also(content) else: self[section] = content @property def _obj(self): if hasattr(self, "_cls"): return self._cls elif hasattr(self, "_f"): return self._f return None def _error_location(self, msg, error=True): if self._obj is not None: # we know where the docs came from: try: filename = inspect.getsourcefile(self._obj) except TypeError: filename = None # Make UserWarning more descriptive via object introspection. # Skip if introspection fails name = getattr(self._obj, "__name__", None) if name is None: name = getattr(getattr(self._obj, "__class__", None), "__name__", None) if name is not None: msg += f" in the docstring of {name}" msg += f" in {filename}." if filename else "" if error: raise ValueError(msg) else: warn(msg) # string conversion routines def _str_header(self, name, symbol="-"): return [name, len(name) * symbol] def _str_indent(self, doc, indent=4): return [" " * indent + line for line in doc] def _str_signature(self): if self["Signature"]: return [self["Signature"].replace("*", r"\*")] + [""] return [""] def _str_summary(self): if self["Summary"]: return self["Summary"] + [""] return [] def _str_extended_summary(self): if self["Extended Summary"]: return self["Extended Summary"] + [""] return [] def _str_param_list(self, name): out = [] if self[name]: out += self._str_header(name) for param in self[name]: parts = [] if param.name: parts.append(param.name) if param.type: parts.append(param.type) out += [" : ".join(parts)] if param.desc and "".join(param.desc).strip(): out += self._str_indent(param.desc) out += [""] return out def _str_section(self, name): out = [] if self[name]: out += self._str_header(name) out += self[name] out += [""] return out def _str_see_also(self, func_role): if not self["See Also"]: return [] out = [] out += self._str_header("See Also") out += [""] last_had_desc = True for funcs, desc in self["See Also"]: assert isinstance(funcs, list) links = [] for func, role in funcs: if role: link = f":{role}:`{func}`" elif func_role: link = f":{func_role}:`{func}`" else: link = f"`{func}`_" links.append(link) link = ", ".join(links) out += [link] if desc: out += self._str_indent([" ".join(desc)]) last_had_desc = True else: last_had_desc = False out += self._str_indent([self.empty_description]) if last_had_desc: out += [""] out += [""] return out def _str_index(self): idx = self["index"] out = [] output_index = False default_index = idx.get("default", "") if default_index: output_index = True out += [f".. index:: {default_index}"] for section, references in idx.items(): if section == "default": continue output_index = True out += [f" :{section}: {', '.join(references)}"] if output_index: return out return "" def __str__(self, func_role=""): out = [] out += self._str_signature() out += self._str_summary() out += self._str_extended_summary() for param_list in ( "Parameters", "Returns", "Yields", "Receives", "Other Parameters", "Raises", "Warns", ): out += self._str_param_list(param_list) out += self._str_section("Warnings") out += self._str_see_also(func_role) for s in ("Notes", "References", "Examples"): out += self._str_section(s) for param_list in ("Attributes", "Methods"): out += self._str_param_list(param_list) out += self._str_index() return "\n".join(out) def dedent_lines(lines): """Deindent a list of lines maximally""" return textwrap.dedent("\n".join(lines)).split("\n") class FunctionDoc(NumpyDocString): def __init__(self, func, role="func", doc=None, config=None): self._f = func self._role = role # e.g. "func" or "meth" if doc is None: if func is None: raise ValueError("No function or docstring given") doc = inspect.getdoc(func) or "" if config is None: config = {} NumpyDocString.__init__(self, doc, config) def get_func(self): func_name = getattr(self._f, "__name__", self.__class__.__name__) if inspect.isclass(self._f): func = getattr(self._f, "__call__", self._f.__init__) else: func = self._f return func, func_name def __str__(self): out = "" func, func_name = self.get_func() roles = {"func": "function", "meth": "method"} if self._role: if self._role not in roles: print(f"Warning: invalid role {self._role}") out += f".. {roles.get(self._role, '')}:: {func_name}\n \n\n" out += super().__str__(func_role=self._role) return out class ObjDoc(NumpyDocString): def __init__(self, obj, doc=None, config=None): self._f = obj if config is None: config = {} NumpyDocString.__init__(self, doc, config=config) class ClassDoc(NumpyDocString): extra_public_methods = ["__call__"] def __init__(self, cls, doc=None, modulename="", func_doc=FunctionDoc, config=None): if not inspect.isclass(cls) and cls is not None: raise ValueError(f"Expected a class or None, but got {cls!r}") self._cls = cls if "sphinx" in sys.modules: from sphinx.ext.autodoc import ALL else: ALL = object() if config is None: config = {} self.show_inherited_members = config.get("show_inherited_class_members", True) if modulename and not modulename.endswith("."): modulename += "." self._mod = modulename if doc is None: if cls is None: raise ValueError("No class or documentation string given") doc = pydoc.getdoc(cls) NumpyDocString.__init__(self, doc) _members = config.get("members", []) if _members is ALL: _members = None _exclude = config.get("exclude-members", []) if config.get("show_class_members", True) and _exclude is not ALL: def splitlines_x(s): if not s: return [] else: return s.splitlines() for field, items in [ ("Methods", self.methods), ("Attributes", self.properties), ]: if not self[field]: doc_list = [] for name in sorted(items): if name in _exclude or (_members and name not in _members): continue try: doc_item = pydoc.getdoc(getattr(self._cls, name)) doc_list.append(Parameter(name, "", splitlines_x(doc_item))) except AttributeError: pass # method doesn't exist self[field] = doc_list @property def methods(self): if self._cls is None: return [] return [ name for name, func in inspect.getmembers(self._cls) if ( (not name.startswith("_") or name in self.extra_public_methods) and isinstance(func, Callable) and self._is_show_member(name) ) ] @property def properties(self): if self._cls is None: return [] return [ name for name, func in inspect.getmembers(self._cls) if ( not name.startswith("_") and ( func is None or isinstance(func, (property, cached_property)) or inspect.isdatadescriptor(func) ) and self._is_show_member(name) ) ] def _is_show_member(self, name): if self.show_inherited_members: return True # show all class members if name not in self._cls.__dict__: return False # class member is inherited, we do not show it return True def get_doc_object( obj, what=None, doc=None, config=None, class_doc=ClassDoc, func_doc=FunctionDoc, obj_doc=ObjDoc, ): if what is None: if inspect.isclass(obj): what = "class" elif inspect.ismodule(obj): what = "module" elif isinstance(obj, Callable): what = "function" else: what = "object" if config is None: config = {} if what == "class": return class_doc(obj, func_doc=func_doc, doc=doc, config=config) elif what in ("function", "method"): return func_doc(obj, doc=doc, config=config) else: if doc is None: doc = pydoc.getdoc(obj) return obj_doc(obj, doc, config=config)