1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
|
# ===========================================================================
# https://www.gnu.org/software/autoconf-archive/ax_lib_hdf5.html
# ===========================================================================
#
# SYNOPSIS
#
# AX_LIB_HDF5([serial/parallel])
#
# DESCRIPTION
#
# This macro provides tests of the availability of HDF5 library.
#
# The optional macro argument should be either 'serial' or 'parallel'. The
# former only looks for serial HDF5 installations via h5cc. The latter
# only looks for parallel HDF5 installations via h5pcc. If the optional
# argument is omitted, serial installations will be preferred over
# parallel ones.
#
# The macro adds a --with-hdf5 option accepting one of three values:
#
# no - do not check for the HDF5 library.
# yes - do check for HDF5 library in standard locations.
# path - complete path to the HDF5 helper script h5cc or h5pcc.
#
# If HDF5 is successfully found, this macro calls
#
# AC_SUBST(HDF5_VERSION)
# AC_SUBST(HDF5_CC)
# AC_SUBST(HDF5_CFLAGS)
# AC_SUBST(HDF5_CPPFLAGS)
# AC_SUBST(HDF5_LDFLAGS)
# AC_SUBST(HDF5_LIBS)
# AC_SUBST(HDF5_FC)
# AC_SUBST(HDF5_FFLAGS)
# AC_SUBST(HDF5_FLIBS)
# AC_SUBST(HDF5_TYPE)
# AC_DEFINE(HAVE_HDF5)
#
# and sets with_hdf5="yes". Additionally, the macro sets
# with_hdf5_fortran="yes" if a matching Fortran wrapper script is found.
# Note that Autoconf's Fortran support is not used to perform this check.
# H5CC and H5FC will contain the appropriate serial or parallel HDF5
# wrapper script locations.
#
# If HDF5 is disabled or not found, this macros sets with_hdf5="no" and
# with_hdf5_fortran="no".
#
# Your configuration script can test $with_hdf to take any further
# actions. HDF5_{C,CPP,LD}FLAGS may be used when building with C or C++.
# HDF5_F{FLAGS,LIBS} should be used when building Fortran applications.
#
# To use the macro, one would code one of the following in "configure.ac"
# before AC_OUTPUT:
#
# 1) dnl Check for HDF5 support
# AX_LIB_HDF5()
#
# 2) dnl Check for serial HDF5 support
# AX_LIB_HDF5([serial])
#
# 3) dnl Check for parallel HDF5 support
# AX_LIB_HDF5([parallel])
#
# One could test $with_hdf5 for the outcome or display it as follows
#
# echo "HDF5 support: $with_hdf5"
#
# You could also for example, override the default CC in "configure.ac" to
# enforce compilation with the compiler that HDF5 uses:
#
# AX_LIB_HDF5([parallel])
# if test "$with_hdf5" = "yes"; then
# CC="$HDF5_CC"
# else
# AC_MSG_ERROR([Unable to find HDF5, we need parallel HDF5.])
# fi
#
# The HDF5_TYPE environment variable returns "parallel" or "serial",
# depending on which type of library is found.
#
# LICENSE
#
# Copyright (c) 2009 Timothy Brown <tbrown@freeshell.org>
# Copyright (c) 2010 Rhys Ulerich <rhys.ulerich@gmail.com>
#
# Copying and distribution of this file, with or without modification, are
# permitted in any medium without royalty provided the copyright notice
# and this notice are preserved. This file is offered as-is, without any
# warranty.
#serial 20
AC_DEFUN([AX_LIB_HDF5], [
AC_REQUIRE([AC_PROG_SED])
AC_REQUIRE([AC_PROG_AWK])
AC_REQUIRE([AC_PROG_GREP])
dnl Check first argument is one of the recognized values.
dnl Fail eagerly if is incorrect as this simplifies case statements below.
if test "m4_normalize(m4_default([$1],[]))" = "" ; then
: # Recognized value
elif test "m4_normalize(m4_default([$1],[]))" = "serial" ; then
: # Recognized value
elif test "m4_normalize(m4_default([$1],[]))" = "parallel"; then
: # Recognized value
else
AC_MSG_ERROR([
Unrecognized value for AX[]_LIB_HDF5 within configure.ac.
If supplied, argument 1 must be either 'serial' or 'parallel'.
])
fi
dnl Add a default --with-hdf5 configuration option.
AC_ARG_WITH([hdf5],
AS_HELP_STRING(
[--with-hdf5=[yes/no/PATH]],
m4_case(m4_normalize([$1]),
[serial], [location of h5cc for serial HDF5 configuration],
[parallel], [location of h5pcc for parallel HDF5 configuration],
[location of h5cc or h5pcc for HDF5 configuration])
),
[if test "$withval" = "no"; then
with_hdf5="no"
elif test "$withval" = "yes"; then
with_hdf5="yes"
else
with_hdf5="yes"
H5CC="$withval"
fi],
[with_hdf5="yes"]
)
dnl Set defaults to blank
HDF5_CC=""
HDF5_VERSION=""
HDF5_CFLAGS=""
HDF5_CPPFLAGS=""
HDF5_LDFLAGS=""
HDF5_LIBS=""
HDF5_FC=""
HDF5_FFLAGS=""
HDF5_FLIBS=""
HDF5_TYPE=""
dnl Try and find hdf5 compiler tools and options.
if test "$with_hdf5" = "yes"; then
if test -z "$H5CC"; then
dnl Check to see if H5CC is in the path.
AC_PATH_PROGS(
[H5CC],
m4_case(m4_normalize([$1]),
[serial], [h5cc],
[parallel], [h5pcc],
[h5cc h5pcc]),
[])
else
AC_MSG_CHECKING([Using provided HDF5 C wrapper])
AC_MSG_RESULT([$H5CC])
fi
AC_MSG_CHECKING([for HDF5 type])
AS_CASE([$H5CC],
[*h5pcc], [HDF5_TYPE=parallel],
[*h5cc], [HDF5_TYPE=serial],
[HDF5_TYPE=neither])
AC_MSG_RESULT([$HDF5_TYPE])
AC_MSG_CHECKING([for HDF5 libraries])
if test ! -f "$H5CC" || test ! -x "$H5CC"; then
AC_MSG_RESULT([no])
AC_MSG_WARN(m4_case(m4_normalize([$1]),
[serial], [
Unable to locate serial HDF5 compilation helper script 'h5cc'.
Please specify --with-hdf5=<LOCATION> as the full path to h5cc.
HDF5 support is being disabled (equivalent to --with-hdf5=no).
], [parallel],[
Unable to locate parallel HDF5 compilation helper script 'h5pcc'.
Please specify --with-hdf5=<LOCATION> as the full path to h5pcc.
HDF5 support is being disabled (equivalent to --with-hdf5=no).
], [
Unable to locate HDF5 compilation helper scripts 'h5cc' or 'h5pcc'.
Please specify --with-hdf5=<LOCATION> as the full path to h5cc or h5pcc.
HDF5 support is being disabled (equivalent to --with-hdf5=no).
]))
with_hdf5="no"
with_hdf5_fortran="no"
else
dnl Get the h5cc output
HDF5_SHOW=$(eval $H5CC -show)
dnl Get the actual compiler used
HDF5_CC=$(eval $H5CC -show | head -n 1 | $AWK '{print $[]1}')
if test "$HDF5_CC" = "ccache"; then
HDF5_CC=$(eval $H5CC -show | head -n 1 | $AWK '{print $[]2}')
fi
dnl h5cc provides both AM_ and non-AM_ options
dnl depending on how it was compiled either one of
dnl these are empty. Lets roll them both into one.
dnl Look for "HDF5 Version: X.Y.Z"
HDF5_VERSION=$(eval $H5CC -showconfig | $GREP 'HDF5 Version:' \
| $AWK '{print $[]3}')
dnl A ideal situation would be where everything we needed was
dnl in the AM_* variables. However most systems are not like this
dnl and seem to have the values in the non-AM variables.
dnl
dnl We try the following to find the flags:
dnl (1) Look for "NAME:" tags
dnl (2) Look for "H5_NAME:" tags
dnl (3) Look for "AM_NAME:" tags
dnl
HDF5_tmp_flags=$(eval $H5CC -showconfig \
| $GREP 'FLAGS\|Extra libraries:' \
| $AWK -F: '{printf("%s "), $[]2}' )
dnl Find the installation directory and append include/
HDF5_tmp_inst=$(eval $H5CC -showconfig \
| $GREP 'Installation point:' \
| $AWK '{print $[]NF}' )
dnl Add this to the CPPFLAGS
HDF5_CPPFLAGS="-I${HDF5_tmp_inst}/include"
dnl Now sort the flags out based upon their prefixes
for arg in $HDF5_SHOW $HDF5_tmp_flags ; do
case "$arg" in
-I*) echo $HDF5_CPPFLAGS | $GREP -e "$arg" 2>&1 >/dev/null \
|| HDF5_CPPFLAGS="$HDF5_CPPFLAGS $arg"
;;
-L*) echo $HDF5_LDFLAGS | $GREP -e "$arg" 2>&1 >/dev/null \
|| HDF5_LDFLAGS="$HDF5_LDFLAGS $arg"
;;
-l*) echo $HDF5_LIBS | $GREP -e "$arg" 2>&1 >/dev/null \
|| HDF5_LIBS="$HDF5_LIBS $arg"
;;
esac
done
HDF5_LIBS="-lhdf5 $HDF5_LIBS"
AC_MSG_RESULT([yes (version $[HDF5_VERSION])])
dnl See if we can compile
AC_LANG_PUSH([C])
ax_lib_hdf5_save_CC=$CC
ax_lib_hdf5_save_CPPFLAGS=$CPPFLAGS
ax_lib_hdf5_save_LIBS=$LIBS
ax_lib_hdf5_save_LDFLAGS=$LDFLAGS
CC=$HDF5_CC
CPPFLAGS=$HDF5_CPPFLAGS
LIBS=$HDF5_LIBS
LDFLAGS=$HDF5_LDFLAGS
AC_CHECK_HEADER([hdf5.h], [ac_cv_hadf5_h=yes], [ac_cv_hadf5_h=no])
AC_CHECK_LIB([hdf5], [H5Fcreate], [ac_cv_libhdf5=yes],
[ac_cv_libhdf5=no])
if test "$ac_cv_hadf5_h" = "no" && test "$ac_cv_libhdf5" = "no" ; then
AC_MSG_WARN([Unable to compile HDF5 test program])
fi
dnl Look for HDF5's high level library
AC_HAVE_LIBRARY([hdf5_hl], [HDF5_LIBS="-lhdf5_hl $HDF5_LIBS"], [], [])
CC=$ax_lib_hdf5_save_CC
CPPFLAGS=$ax_lib_hdf5_save_CPPFLAGS
LIBS=$ax_lib_hdf5_save_LIBS
LDFLAGS=$ax_lib_hdf5_save_LDFLAGS
AC_LANG_POP([C])
AC_MSG_CHECKING([for matching HDF5 Fortran wrapper])
dnl Presume HDF5 Fortran wrapper is just a name variant from H5CC
H5FC=$(eval echo -n $H5CC | $SED -n 's/cc$/fc/p')
if test -x "$H5FC"; then
AC_MSG_RESULT([$H5FC])
with_hdf5_fortran="yes"
AC_SUBST([H5FC])
dnl Again, pry any remaining -Idir/-Ldir from compiler wrapper
for arg in `$H5FC -show`
do
case "$arg" in #(
-I*) echo $HDF5_FFLAGS | $GREP -e "$arg" >/dev/null \
|| HDF5_FFLAGS="$HDF5_FFLAGS $arg"
;;#(
-L*) echo $HDF5_FFLAGS | $GREP -e "$arg" >/dev/null \
|| HDF5_FFLAGS="$HDF5_FFLAGS $arg"
dnl HDF5 installs .mod files in with libraries,
dnl but some compilers need to find them with -I
echo $HDF5_FFLAGS | $GREP -e "-I${arg#-L}" >/dev/null \
|| HDF5_FFLAGS="$HDF5_FFLAGS -I${arg#-L}"
;;
esac
done
dnl Make Fortran link line by inserting Fortran libraries
for arg in $HDF5_LIBS
do
case "$arg" in #(
-lhdf5_hl) HDF5_FLIBS="$HDF5_FLIBS -lhdf5hl_fortran $arg"
;; #(
-lhdf5) HDF5_FLIBS="$HDF5_FLIBS -lhdf5_fortran $arg"
;; #(
*) HDF5_FLIBS="$HDF5_FLIBS $arg"
;;
esac
done
else
AC_MSG_RESULT([no])
with_hdf5_fortran="no"
fi
AC_SUBST([HDF5_VERSION])
AC_SUBST([HDF5_CC])
AC_SUBST([HDF5_CFLAGS])
AC_SUBST([HDF5_CPPFLAGS])
AC_SUBST([HDF5_LDFLAGS])
AC_SUBST([HDF5_LIBS])
AC_SUBST([HDF5_FC])
AC_SUBST([HDF5_FFLAGS])
AC_SUBST([HDF5_FLIBS])
AC_SUBST([HDF5_TYPE])
AC_DEFINE([HAVE_HDF5], [1], [Defined if you have HDF5 support])
fi
fi
])
|
