Merge branch 'jc/cachetree' into cr/reset

* jc/cachetree:
  Simplify cache API
  git-format-patch --in-reply-to: accept <message@id> with angle brackets
  git-add -u: do not barf on type changes
  Remove duplicate note about removing commits with git-filter-branch
  git-clone: improve error message if curl program is missing or not executable
  git.el: Allow the add and remove commands to be applied to ignored files.
  git.el: Allow selecting whether to display uptodate/unknown/ignored files.
  git.el: Keep the status buffer sorted by filename.
  hooks--update: Explicitly check for all zeros for a deleted ref.

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