Update deprecations after 3.0 dep sprint (#6031)

* Update deprecation todo list

* Remove silenced warnings

2 files changed, 0 insertions, 81 deletions

diff --git a/doc/developer/deprecations.rst b/doc/developer/deprecations.rst
index d35e24a0..120f49ef 100644
--- a/doc/developer/deprecations.rst
+++ b/doc/developer/deprecations.rst
@@ -46,46 +46,18 @@ Version 3.0
 
 * In ``readwrite/gml.py`` remove ``literal_stringizer`` and related tests.
 * In ``readwrite/gml.py`` remove ``literal_destringizer`` and related tests.
-* In ``utils/misc.py`` remove ``is_string_like`` and related tests.
-* In ``utils/misc.py`` remove ``make_str`` and related tests.
-* In ``utils/misc.py`` remove ``is_iterator``.
-* In ``utils/misc.py`` remove ``iterable``.
-* In ``utils/misc.py`` remove ``is_list_of_ints``.
-* In ``utils/misc.py`` remove ``consume``.
-* In ``utils/misc.py`` remove ``default_opener``.
-* In ``utils/misc.py`` remove ``empty_generator``.
-* Remove ``utils/contextmanagers.py`` and related tests.
-* In ``linalg/algebraicconnectivity.py`` remove ``_CholeskySolver`` and related code.
-* In ``readwrite/json_graph/cytoscape.py``, change function signature for
-  ``cytoscape_graph`` and ``cytoscape_data`` to replace the ``attrs`` keyword.
-  argument with explicit ``name`` and ``ident`` keyword args.
-* In ``readwrite/json_graph/tree.py``, remove ``attrs`` kwarg from ``tree_graph``
-  and ``tree_data``.
 * Remove ``copy`` method in the coreview Filtered-related classes and related tests.
 * In ``algorithms/link_analysis/pagerank_alg.py`` replace ``pagerank`` with ``pagerank_scipy``.
 * In ``algorithms/link_analysis/pagerank_alg.py`` rename ``pagerank_numpy`` as ``_pagerank_numpy``.
 * In ``convert_matrix.py`` remove ``order`` kwarg from ``to_pandas_edgelist`` and docstring
-* In ``algorithms/link_analysis/hits_alg.py`` remove ``hub_matrix`` and ``authority_matrix``
-* In ``algorithms/link_analysis/hits_alg.py``, remove ``hits_numpy`` and ``hist_scipy``.
-* Remove ``testing``.
-* In ``linalg/graphmatrix.py`` remove ``adj_matrix``.
 * In ``algorithms/operators/binary.py`` remove ``name`` kwarg from ``union`` and docstring.
-* In ``generators/geometric.py`` remove ``euclidean`` and tests.
 * In ``algorithms/link_analysis/pagerank_alg.py``, remove the
   ``np.asmatrix`` wrappers on the return values of ``google_matrix`` and remove
   the associated FutureWarning.
 * In ``linalg/attrmatrix.py`` remove the FutureWarning, update the
   return type by removing ``np.asmatrix``, and update the docstring to
   reflect that the function returns a ``numpy.ndarray`` instance.
-* In ``generators/small.py`` remove ``make_small_graph`` and
-  ``make_small_undirected_graph``.
-* In ``classes/function.py`` remove ``info``.
-* In ``algorithms/community/modularity_max.py``, remove the deprecated
-  ``n_communities`` parameter from the ``greedy_modularity_communities``
-  function.
 * In ``algorithms/distance_measures.py`` remove ``extrema_bounding``.
-* In ``utils/misc.py`` remove ``dict_to_numpy_array1`` and ``dict_to_numpy_array2``.
-* In ``utils/misc.py`` remove ``to_tuple``.
 * In ``algorithms/matching.py``, remove parameter ``maxcardinality`` from ``min_weight_matching``.
 
 
diff --git a/networkx/conftest.py b/networkx/conftest.py
index 2fa779a9..5c95c9fc 100644
--- a/networkx/conftest.py
+++ b/networkx/conftest.py
@@ -52,43 +52,6 @@ def set_warnings():
         category=DeprecationWarning,
         message="literal_destringizer is deprecated",
     )
-    warnings.filterwarnings(
-        "ignore",
-        category=DeprecationWarning,
-        message="context manager reversed is deprecated",
-    )
-    warnings.filterwarnings(
-        "ignore",
-        category=DeprecationWarning,
-        message="This will return a generator in 3.0*",
-    )
-    warnings.filterwarnings(
-        "ignore", category=PendingDeprecationWarning, message="the matrix subclass"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="edges_from_line"
-    )
-    warnings.filterwarnings("ignore", category=DeprecationWarning, message="consume")
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="iterable is deprecated"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="`almost_equal`"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="`assert_nodes_equal`"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="`assert_edges_equal`"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="`assert_graphs_equal`"
-    )
-    warnings.filterwarnings(
-        "ignore",
-        category=FutureWarning,
-        message="google_matrix will return an np.ndarray instead of a np.matrix",
-    )
     ### Future warnings from scipy.sparse array transition
     warnings.filterwarnings(
         "ignore", category=FutureWarning, message="biadjacency_matrix"
@@ -119,22 +82,6 @@ def set_warnings():
     warnings.filterwarnings(
         "ignore", category=FutureWarning, message="directed_modularity_matrix"
     )
-    warnings.filterwarnings(
-        "ignore", category=FutureWarning, message="adjacency_matrix"
-    )
-    warnings.filterwarnings(
-        "ignore",
-        category=DeprecationWarning,
-        message="\n\nThe scipy.sparse array containers",
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="networkx.project"
-    )
-    warnings.filterwarnings(
-        "ignore", category=DeprecationWarning, message="\nfind_cores"
-    )
-    warnings.filterwarnings("ignore", category=FutureWarning, message="attr_matrix")
-    warnings.filterwarnings("ignore", category=DeprecationWarning, message="info")
     # create_using for scale_free_graph
     warnings.filterwarnings(
         "ignore", category=DeprecationWarning, message="The create_using argument"