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authorPauli Virtanen <pav@iki.fi>2010-02-20 18:16:37 +0000
committerPauli Virtanen <pav@iki.fi>2010-02-20 18:16:37 +0000
commit20121f4b65d7a5396a067c7ecd6818a7a5505639 (patch)
tree80db3f0848a85c5522e8fe3a727782b2838b8359 /numpy/lib/tests/test_io.py
parentb1c25de02e4bc1dd37778f5919b404e93e7ecdc6 (diff)
downloadnumpy-20121f4b65d7a5396a067c7ecd6818a7a5505639.tar.gz
3K: lib: use BytesIO in test_io
Diffstat (limited to 'numpy/lib/tests/test_io.py')
-rw-r--r--numpy/lib/tests/test_io.py224
1 files changed, 115 insertions, 109 deletions
diff --git a/numpy/lib/tests/test_io.py b/numpy/lib/tests/test_io.py
index 7c99230d1..61cedd603 100644
--- a/numpy/lib/tests/test_io.py
+++ b/numpy/lib/tests/test_io.py
@@ -3,13 +3,19 @@ import numpy.ma as ma
from numpy.ma.testutils import *
from numpy.testing import assert_warns
-import StringIO
+import sys
+
+if sys.version_info[0] >= 3:
+ from io import BytesIO as StringIO
+else:
+ from StringIO import StringIO
+
import gzip
import os
import threading
from tempfile import mkstemp, NamedTemporaryFile
-import sys, time
+import time
from datetime import datetime
from numpy.lib._iotools import ConverterError, ConverterLockError, \
@@ -56,7 +62,7 @@ class RoundtripTest(object):
target_file = NamedTemporaryFile()
load_file = target_file.name
else:
- target_file = StringIO.StringIO()
+ target_file = StringIO()
load_file = target_file
arr = args
@@ -65,7 +71,7 @@ class RoundtripTest(object):
target_file.flush()
target_file.seek(0)
- if sys.platform == 'win32' and not isinstance(target_file, StringIO.StringIO):
+ if sys.platform == 'win32' and not isinstance(target_file, StringIO):
target_file.close()
arr_reloaded = np.load(load_file, **load_kwds)
@@ -118,7 +124,7 @@ class TestSavezLoad(RoundtripTest, TestCase):
def test_named_arrays(self):
a = np.array([[1, 2], [3, 4]], float)
b = np.array([[1 + 2j, 2 + 7j], [3 - 6j, 4 + 12j]], complex)
- c = StringIO.StringIO()
+ c = StringIO()
np.savez(c, file_a=a, file_b=b)
c.seek(0)
l = np.load(c)
@@ -156,7 +162,7 @@ class TestSaveTxt(TestCase):
def test_array(self):
a = np.array([[1, 2], [3, 4]], float)
fmt = "%.18e"
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt=fmt)
c.seek(0)
assert_equal(c.readlines(),
@@ -164,14 +170,14 @@ class TestSaveTxt(TestCase):
(fmt + ' ' + fmt + '\n') % (3, 4)])
a = np.array([[1, 2], [3, 4]], int)
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1 2\n', '3 4\n'])
def test_1D(self):
a = np.array([1, 2, 3, 4], int)
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
lines = c.readlines()
@@ -179,35 +185,35 @@ class TestSaveTxt(TestCase):
def test_record(self):
a = np.array([(1, 2), (3, 4)], dtype=[('x', 'i4'), ('y', 'i4')])
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1 2\n', '3 4\n'])
def test_delimiter(self):
a = np.array([[1., 2.], [3., 4.]])
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, delimiter=',', fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1,2\n', '3,4\n'])
def test_format(self):
a = np.array([(1, 2), (3, 4)])
- c = StringIO.StringIO()
+ c = StringIO()
# Sequence of formats
np.savetxt(c, a, fmt=['%02d', '%3.1f'])
c.seek(0)
assert_equal(c.readlines(), ['01 2.0\n', '03 4.0\n'])
# A single multiformat string
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt='%02d : %3.1f')
c.seek(0)
lines = c.readlines()
assert_equal(lines, ['01 : 2.0\n', '03 : 4.0\n'])
# Specify delimiter, should be overiden
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a, fmt='%02d : %3.1f', delimiter=',')
c.seek(0)
lines = c.readlines()
@@ -216,14 +222,14 @@ class TestSaveTxt(TestCase):
class TestLoadTxt(TestCase):
def test_record(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1 2\n3 4')
c.seek(0)
x = np.loadtxt(c, dtype=[('x', np.int32), ('y', np.int32)])
a = np.array([(1, 2), (3, 4)], dtype=[('x', 'i4'), ('y', 'i4')])
assert_array_equal(x, a)
- d = StringIO.StringIO()
+ d = StringIO()
d.write('M 64.0 75.0\nF 25.0 60.0')
d.seek(0)
mydescriptor = {'names': ('gender', 'age', 'weight'),
@@ -235,7 +241,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(y, b)
def test_array(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1 2\n3 4')
c.seek(0)
@@ -249,14 +255,14 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_1D(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1\n2\n3\n4\n')
c.seek(0)
x = np.loadtxt(c, dtype=int)
a = np.array([1, 2, 3, 4], int)
assert_array_equal(x, a)
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1,2,3,4\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',')
@@ -264,7 +270,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_missing(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1,2,3,,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
@@ -273,7 +279,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_converters_with_usecols(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1,2,3,,5\n6,7,8,9,10\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
@@ -283,7 +289,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_comments(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('# comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
@@ -292,7 +298,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_skiprows(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
@@ -300,7 +306,7 @@ class TestLoadTxt(TestCase):
a = np.array([1, 2, 3, 5], int)
assert_array_equal(x, a)
- c = StringIO.StringIO()
+ c = StringIO()
c.write('# comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
@@ -310,14 +316,14 @@ class TestLoadTxt(TestCase):
def test_usecols(self):
a = np.array([[1, 2], [3, 4]], float)
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1,))
assert_array_equal(x, a[:, 1])
a = np.array([[1, 2, 3], [3, 4, 5]], float)
- c = StringIO.StringIO()
+ c = StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1, 2))
@@ -332,7 +338,7 @@ class TestLoadTxt(TestCase):
data = '''JOE 70.1 25.3
BOB 60.5 27.9
'''
- c = StringIO.StringIO(data)
+ c = StringIO(data)
names = ['stid', 'temp']
dtypes = ['S4', 'f8']
arr = np.loadtxt(c, usecols=(0, 2), dtype=zip(names, dtypes))
@@ -340,7 +346,7 @@ class TestLoadTxt(TestCase):
assert_equal(arr['temp'], [25.3, 27.9])
def test_fancy_dtype(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1,2,3.0\n4,5,6.0\n')
c.seek(0)
dt = np.dtype([('x', int), ('y', [('t', int), ('s', float)])])
@@ -349,7 +355,7 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_shaped_dtype(self):
- c = StringIO.StringIO("aaaa 1.0 8.0 1 2 3 4 5 6")
+ c = StringIO("aaaa 1.0 8.0 1 2 3 4 5 6")
dt = np.dtype([('name', 'S4'), ('x', float), ('y', float),
('block', int, (2, 3))])
x = np.loadtxt(c, dtype=dt)
@@ -358,11 +364,11 @@ class TestLoadTxt(TestCase):
assert_array_equal(x, a)
def test_empty_file(self):
- c = StringIO.StringIO()
+ c = StringIO()
assert_raises(IOError, np.loadtxt, c)
def test_unused_converter(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.writelines(['1 21\n', '3 42\n'])
c.seek(0)
data = np.loadtxt(c, usecols=(1,),
@@ -385,7 +391,7 @@ class TestLoadTxt(TestCase):
ndtype = [('idx', int), ('code', np.object)]
func = lambda s: strptime(s.strip(), "%Y-%m-%d")
converters = {1: func}
- test = np.loadtxt(StringIO.StringIO(data), delimiter=";", dtype=ndtype,
+ test = np.loadtxt(StringIO(data), delimiter=";", dtype=ndtype,
converters=converters)
control = np.array([(1, datetime(2001, 1, 1)), (2, datetime(2002, 1, 31))],
dtype=ndtype)
@@ -395,7 +401,7 @@ class TestLoadTxt(TestCase):
class Testfromregex(TestCase):
def test_record(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1.312 foo\n1.534 bar\n4.444 qux')
c.seek(0)
@@ -406,7 +412,7 @@ class Testfromregex(TestCase):
assert_array_equal(x, a)
def test_record_2(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1312 foo\n1534 bar\n4444 qux')
c.seek(0)
@@ -417,7 +423,7 @@ class Testfromregex(TestCase):
assert_array_equal(x, a)
def test_record_3(self):
- c = StringIO.StringIO()
+ c = StringIO()
c.write('1312 foo\n1534 bar\n4444 qux')
c.seek(0)
@@ -434,13 +440,13 @@ class TestFromTxt(TestCase):
#
def test_record(self):
"Test w/ explicit dtype"
- data = StringIO.StringIO('1 2\n3 4')
+ data = StringIO('1 2\n3 4')
# data.seek(0)
test = np.ndfromtxt(data, dtype=[('x', np.int32), ('y', np.int32)])
control = np.array([(1, 2), (3, 4)], dtype=[('x', 'i4'), ('y', 'i4')])
assert_equal(test, control)
#
- data = StringIO.StringIO('M 64.0 75.0\nF 25.0 60.0')
+ data = StringIO('M 64.0 75.0\nF 25.0 60.0')
# data.seek(0)
descriptor = {'names': ('gender', 'age', 'weight'),
'formats': ('S1', 'i4', 'f4')}
@@ -451,7 +457,7 @@ class TestFromTxt(TestCase):
def test_array(self):
"Test outputing a standard ndarray"
- data = StringIO.StringIO('1 2\n3 4')
+ data = StringIO('1 2\n3 4')
control = np.array([[1, 2], [3, 4]], dtype=int)
test = np.ndfromtxt(data, dtype=int)
assert_array_equal(test, control)
@@ -465,11 +471,11 @@ class TestFromTxt(TestCase):
"Test squeezing to 1D"
control = np.array([1, 2, 3, 4], int)
#
- data = StringIO.StringIO('1\n2\n3\n4\n')
+ data = StringIO('1\n2\n3\n4\n')
test = np.ndfromtxt(data, dtype=int)
assert_array_equal(test, control)
#
- data = StringIO.StringIO('1,2,3,4\n')
+ data = StringIO('1,2,3,4\n')
test = np.ndfromtxt(data, dtype=int, delimiter=',')
assert_array_equal(test, control)
@@ -477,11 +483,11 @@ class TestFromTxt(TestCase):
"Test the stripping of comments"
control = np.array([1, 2, 3, 5], int)
# Comment on its own line
- data = StringIO.StringIO('# comment\n1,2,3,5\n')
+ data = StringIO('# comment\n1,2,3,5\n')
test = np.ndfromtxt(data, dtype=int, delimiter=',', comments='#')
assert_equal(test, control)
# Comment at the end of a line
- data = StringIO.StringIO('1,2,3,5# comment\n')
+ data = StringIO('1,2,3,5# comment\n')
test = np.ndfromtxt(data, dtype=int, delimiter=',', comments='#')
assert_equal(test, control)
@@ -490,11 +496,11 @@ class TestFromTxt(TestCase):
control = np.array([1, 2, 3, 5], int)
kwargs = dict(dtype=int, delimiter=',')
#
- data = StringIO.StringIO('comment\n1,2,3,5\n')
+ data = StringIO('comment\n1,2,3,5\n')
test = np.ndfromtxt(data, skip_header=1, **kwargs)
assert_equal(test, control)
#
- data = StringIO.StringIO('# comment\n1,2,3,5\n')
+ data = StringIO('# comment\n1,2,3,5\n')
test = np.loadtxt(data, skiprows=1, **kwargs)
assert_equal(test, control)
@@ -504,14 +510,14 @@ class TestFromTxt(TestCase):
data.extend(["%i,%3.1f,%03s" % (i, i, i) for i in range(51)])
data[-1] = "99,99"
kwargs = dict(delimiter=",", names=True, skip_header=5, skip_footer=10)
- test = np.genfromtxt(StringIO.StringIO("\n".join(data)), **kwargs)
+ test = np.genfromtxt(StringIO("\n".join(data)), **kwargs)
ctrl = np.array([("%f" % i, "%f" % i, "%f" % i) for i in range(40)],
dtype=[(_, float) for _ in "ABC"])
assert_equal(test, ctrl)
def test_header(self):
"Test retrieving a header"
- data = StringIO.StringIO('gender age weight\nM 64.0 75.0\nF 25.0 60.0')
+ data = StringIO('gender age weight\nM 64.0 75.0\nF 25.0 60.0')
test = np.ndfromtxt(data, dtype=None, names=True)
control = {'gender': np.array(['M', 'F']),
'age': np.array([64.0, 25.0]),
@@ -522,7 +528,7 @@ class TestFromTxt(TestCase):
def test_auto_dtype(self):
"Test the automatic definition of the output dtype"
- data = StringIO.StringIO('A 64 75.0 3+4j True\nBCD 25 60.0 5+6j False')
+ data = StringIO('A 64 75.0 3+4j True\nBCD 25 60.0 5+6j False')
test = np.ndfromtxt(data, dtype=None)
control = [np.array(['A', 'BCD']),
np.array([64, 25]),
@@ -536,7 +542,7 @@ class TestFromTxt(TestCase):
def test_auto_dtype_uniform(self):
"Tests whether the output dtype can be uniformized"
- data = StringIO.StringIO('1 2 3 4\n5 6 7 8\n')
+ data = StringIO('1 2 3 4\n5 6 7 8\n')
test = np.ndfromtxt(data, dtype=None)
control = np.array([[1, 2, 3, 4], [5, 6, 7, 8]])
assert_equal(test, control)
@@ -544,7 +550,7 @@ class TestFromTxt(TestCase):
def test_fancy_dtype(self):
"Check that a nested dtype isn't MIA"
- data = StringIO.StringIO('1,2,3.0\n4,5,6.0\n')
+ data = StringIO('1,2,3.0\n4,5,6.0\n')
fancydtype = np.dtype([('x', int), ('y', [('t', int), ('s', float)])])
test = np.ndfromtxt(data, dtype=fancydtype, delimiter=',')
control = np.array([(1, (2, 3.0)), (4, (5, 6.0))], dtype=fancydtype)
@@ -555,7 +561,7 @@ class TestFromTxt(TestCase):
"Test overwriting the names of the dtype"
descriptor = {'names': ('g', 'a', 'w'),
'formats': ('S1', 'i4', 'f4')}
- data = StringIO.StringIO('M 64.0 75.0\nF 25.0 60.0')
+ data = StringIO('M 64.0 75.0\nF 25.0 60.0')
names = ('gender', 'age', 'weight')
test = np.ndfromtxt(data, dtype=descriptor, names=names)
descriptor['names'] = names
@@ -566,7 +572,7 @@ class TestFromTxt(TestCase):
def test_commented_header(self):
"Check that names can be retrieved even if the line is commented out."
- data = StringIO.StringIO("""
+ data = StringIO("""
#gender age weight
M 21 72.100000
F 35 58.330000
@@ -578,7 +584,7 @@ M 33 21.99
dtype=[('gender', '|S1'), ('age', int), ('weight', float)])
assert_equal(test, ctrl)
# Ditto, but we should get rid of the first element
- data = StringIO.StringIO("""
+ data = StringIO("""
# gender age weight
M 21 72.100000
F 35 58.330000
@@ -590,7 +596,7 @@ M 33 21.99
def test_autonames_and_usecols(self):
"Tests names and usecols"
- data = StringIO.StringIO('A B C D\n aaaa 121 45 9.1')
+ data = StringIO('A B C D\n aaaa 121 45 9.1')
test = np.ndfromtxt(data, usecols=('A', 'C', 'D'),
names=True, dtype=None)
control = np.array(('aaaa', 45, 9.1),
@@ -600,7 +606,7 @@ M 33 21.99
def test_converters_with_usecols(self):
"Test the combination user-defined converters and usecol"
- data = StringIO.StringIO('1,2,3,,5\n6,7,8,9,10\n')
+ data = StringIO('1,2,3,,5\n6,7,8,9,10\n')
test = np.ndfromtxt(data, dtype=int, delimiter=',',
converters={3:lambda s: int(s or - 999)},
usecols=(1, 3,))
@@ -609,7 +615,7 @@ M 33 21.99
def test_converters_with_usecols_and_names(self):
"Tests names and usecols"
- data = StringIO.StringIO('A B C D\n aaaa 121 45 9.1')
+ data = StringIO('A B C D\n aaaa 121 45 9.1')
test = np.ndfromtxt(data, usecols=('A', 'C', 'D'), names=True,
dtype=None, converters={'C':lambda s: 2 * int(s)})
control = np.array(('aaaa', 90, 9.1),
@@ -619,7 +625,7 @@ M 33 21.99
def test_converters_cornercases(self):
"Test the conversion to datetime."
converter = {'date': lambda s: strptime(s, '%Y-%m-%d %H:%M:%SZ')}
- data = StringIO.StringIO('2009-02-03 12:00:00Z, 72214.0')
+ data = StringIO('2009-02-03 12:00:00Z, 72214.0')
test = np.ndfromtxt(data, delimiter=',', dtype=None,
names=['date', 'stid'], converters=converter)
control = np.array((datetime(2009, 02, 03), 72214.),
@@ -629,7 +635,7 @@ M 33 21.99
def test_unused_converter(self):
"Test whether unused converters are forgotten"
- data = StringIO.StringIO("1 21\n 3 42\n")
+ data = StringIO("1 21\n 3 42\n")
test = np.ndfromtxt(data, usecols=(1,),
converters={0: lambda s: int(s, 16)})
assert_equal(test, [21, 42])
@@ -645,7 +651,7 @@ M 33 21.99
(not 'r' in x.lower() and x.strip() or 0.0))
strip_per = lambda x : float(('%' in x.lower() and x.split()[0]) or
(not '%' in x.lower() and x.strip() or 0.0))
- s = StringIO.StringIO("D01N01,10/1/2003 ,1 %,R 75,400,600\r\n" \
+ s = StringIO("D01N01,10/1/2003 ,1 %,R 75,400,600\r\n" \
"L24U05,12/5/2003, 2 %,1,300, 150.5\r\n"
"D02N03,10/10/2004,R 1,,7,145.55")
kwargs = dict(converters={2 : strip_per, 3 : strip_rand}, delimiter=",",
@@ -655,12 +661,12 @@ M 33 21.99
def test_dtype_with_converters(self):
dstr = "2009; 23; 46"
- test = np.ndfromtxt(StringIO.StringIO(dstr,),
+ test = np.ndfromtxt(StringIO(dstr,),
delimiter=";", dtype=float, converters={0:str})
control = np.array([('2009', 23., 46)],
dtype=[('f0', '|S4'), ('f1', float), ('f2', float)])
assert_equal(test, control)
- test = np.ndfromtxt(StringIO.StringIO(dstr,),
+ test = np.ndfromtxt(StringIO(dstr,),
delimiter=";", dtype=float, converters={0:float})
control = np.array([2009., 23., 46],)
assert_equal(test, control)
@@ -677,7 +683,7 @@ M 33 21.99
ndtype = [('idx', int), ('code', np.object)]
func = lambda s: strptime(s.strip(), "%Y-%m-%d")
converters = {1: func}
- test = np.genfromtxt(StringIO.StringIO(data), delimiter=";", dtype=ndtype,
+ test = np.genfromtxt(StringIO(data), delimiter=";", dtype=ndtype,
converters=converters)
control = np.array([(1, datetime(2001, 1, 1)), (2, datetime(2002, 1, 31))],
dtype=ndtype)
@@ -685,7 +691,7 @@ M 33 21.99
#
ndtype = [('nest', [('idx', int), ('code', np.object)])]
try:
- test = np.genfromtxt(StringIO.StringIO(data), delimiter=";",
+ test = np.genfromtxt(StringIO(data), delimiter=";",
dtype=ndtype, converters=converters)
except NotImplementedError:
pass
@@ -696,7 +702,7 @@ M 33 21.99
def test_userconverters_with_explicit_dtype(self):
"Test user_converters w/ explicit (standard) dtype"
- data = StringIO.StringIO('skip,skip,2001-01-01,1.0,skip')
+ data = StringIO('skip,skip,2001-01-01,1.0,skip')
test = np.genfromtxt(data, delimiter=",", names=None, dtype=float,
usecols=(2, 3), converters={2: str})
control = np.array([('2001-01-01', 1.)],
@@ -706,7 +712,7 @@ M 33 21.99
def test_spacedelimiter(self):
"Test space delimiter"
- data = StringIO.StringIO("1 2 3 4 5\n6 7 8 9 10")
+ data = StringIO("1 2 3 4 5\n6 7 8 9 10")
test = np.ndfromtxt(data)
control = np.array([[ 1., 2., 3., 4., 5.],
[ 6., 7., 8., 9., 10.]])
@@ -714,7 +720,7 @@ M 33 21.99
def test_missing(self):
- data = StringIO.StringIO('1,2,3,,5\n')
+ data = StringIO('1,2,3,,5\n')
test = np.ndfromtxt(data, dtype=int, delimiter=',', \
converters={3:lambda s: int(s or - 999)})
control = np.array([1, 2, 3, -999, 5], int)
@@ -724,7 +730,7 @@ M 33 21.99
def test_missing_with_tabs(self):
"Test w/ a delimiter tab"
txt = "1\t2\t3\n\t2\t\n1\t\t3"
- test = np.genfromtxt(StringIO.StringIO(txt), delimiter="\t",
+ test = np.genfromtxt(StringIO(txt), delimiter="\t",
usemask=True,)
ctrl_d = np.array([(1, 2, 3), (np.nan, 2, np.nan), (1, np.nan, 3)],)
ctrl_m = np.array([(0, 0, 0), (1, 0, 1), (0, 1, 0)], dtype=bool)
@@ -736,14 +742,14 @@ M 33 21.99
"Test the selection of columns"
# Select 1 column
control = np.array([[1, 2], [3, 4]], float)
- data = StringIO.StringIO()
+ data = StringIO()
np.savetxt(data, control)
data.seek(0)
test = np.ndfromtxt(data, dtype=float, usecols=(1,))
assert_equal(test, control[:, 1])
#
control = np.array([[1, 2, 3], [3, 4, 5]], float)
- data = StringIO.StringIO()
+ data = StringIO()
np.savetxt(data, control)
data.seek(0)
test = np.ndfromtxt(data, dtype=float, usecols=(1, 2))
@@ -756,14 +762,14 @@ M 33 21.99
def test_usecols_as_css(self):
"Test giving usecols with a comma-separated string"
data = "1 2 3\n4 5 6"
- test = np.genfromtxt(StringIO.StringIO(data),
+ test = np.genfromtxt(StringIO(data),
names="a, b, c", usecols="a, c")
ctrl = np.array([(1, 3), (4, 6)], dtype=[(_, float) for _ in "ac"])
assert_equal(test, ctrl)
def test_usecols_with_structured_dtype(self):
"Test usecols with an explicit structured dtype"
- data = StringIO.StringIO("""JOE 70.1 25.3\nBOB 60.5 27.9""")
+ data = StringIO("""JOE 70.1 25.3\nBOB 60.5 27.9""")
names = ['stid', 'temp']
dtypes = ['S4', 'f8']
test = np.ndfromtxt(data, usecols=(0, 2), dtype=zip(names, dtypes))
@@ -772,7 +778,7 @@ M 33 21.99
def test_usecols_with_integer(self):
"Test usecols with an integer"
- test = np.genfromtxt(StringIO.StringIO("1 2 3\n4 5 6"), usecols=0)
+ test = np.genfromtxt(StringIO("1 2 3\n4 5 6"), usecols=0)
assert_equal(test, np.array([1., 4.]))
def test_usecols_with_named_columns(self):
@@ -780,22 +786,22 @@ M 33 21.99
ctrl = np.array([(1, 3), (4, 6)], dtype=[('a', float), ('c', float)])
data = "1 2 3\n4 5 6"
kwargs = dict(names="a, b, c")
- test = np.genfromtxt(StringIO.StringIO(data), usecols=(0, -1), **kwargs)
+ test = np.genfromtxt(StringIO(data), usecols=(0, -1), **kwargs)
assert_equal(test, ctrl)
- test = np.genfromtxt(StringIO.StringIO(data),
+ test = np.genfromtxt(StringIO(data),
usecols=('a', 'c'), **kwargs)
assert_equal(test, ctrl)
def test_empty_file(self):
"Test that an empty file raises the proper exception"
- data = StringIO.StringIO()
+ data = StringIO()
assert_raises(IOError, np.ndfromtxt, data)
def test_fancy_dtype_alt(self):
"Check that a nested dtype isn't MIA"
- data = StringIO.StringIO('1,2,3.0\n4,5,6.0\n')
+ data = StringIO('1,2,3.0\n4,5,6.0\n')
fancydtype = np.dtype([('x', int), ('y', [('t', int), ('s', float)])])
test = np.mafromtxt(data, dtype=fancydtype, delimiter=',')
control = ma.array([(1, (2, 3.0)), (4, (5, 6.0))], dtype=fancydtype)
@@ -803,7 +809,7 @@ M 33 21.99
def test_shaped_dtype(self):
- c = StringIO.StringIO("aaaa 1.0 8.0 1 2 3 4 5 6")
+ c = StringIO("aaaa 1.0 8.0 1 2 3 4 5 6")
dt = np.dtype([('name', 'S4'), ('x', float), ('y', float),
('block', int, (2, 3))])
x = np.ndfromtxt(c, dtype=dt)
@@ -813,7 +819,7 @@ M 33 21.99
def test_withmissing(self):
- data = StringIO.StringIO('A,B\n0,1\n2,N/A')
+ data = StringIO('A,B\n0,1\n2,N/A')
kwargs = dict(delimiter=",", missing_values="N/A", names=True)
test = np.mafromtxt(data, dtype=None, **kwargs)
control = ma.array([(0, 1), (2, -1)],
@@ -836,7 +842,7 @@ M 33 21.99
basekwargs = dict(dtype=None, delimiter=",", names=True,)
mdtype = [('A', int), ('B', float), ('C', complex)]
#
- test = np.mafromtxt(StringIO.StringIO(data), missing_values="N/A",
+ test = np.mafromtxt(StringIO(data), missing_values="N/A",
**basekwargs)
control = ma.array([(0, 0.0, 0j), (1, -999, 1j),
(-9, 2.2, -999j), (3, -99, 3j)],
@@ -845,7 +851,7 @@ M 33 21.99
assert_equal(test, control)
#
basekwargs['dtype'] = mdtype
- test = np.mafromtxt(StringIO.StringIO(data),
+ test = np.mafromtxt(StringIO(data),
missing_values={0:-9, 1:-99, 2:-999j}, **basekwargs)
control = ma.array([(0, 0.0, 0j), (1, -999, 1j),
(-9, 2.2, -999j), (3, -99, 3j)],
@@ -853,7 +859,7 @@ M 33 21.99
dtype=mdtype)
assert_equal(test, control)
#
- test = np.mafromtxt(StringIO.StringIO(data),
+ test = np.mafromtxt(StringIO(data),
missing_values={0:-9, 'B':-99, 'C':-999j},
**basekwargs)
control = ma.array([(0, 0.0, 0j), (1, -999, 1j),
@@ -871,18 +877,18 @@ M 33 21.99
names="a,b,c",
missing_values={0:"N/A", 'b':" ", 2:"???"},
filling_values={0:0, 'b':0, 2:-999})
- test = np.genfromtxt(StringIO.StringIO(data), **kwargs)
+ test = np.genfromtxt(StringIO(data), **kwargs)
ctrl = np.array([(0, 2, 3), (4, 0, -999)],
dtype=[(_, int) for _ in "abc"])
assert_equal(test, ctrl)
#
- test = np.genfromtxt(StringIO.StringIO(data), usecols=(0, -1), **kwargs)
+ test = np.genfromtxt(StringIO(data), usecols=(0, -1), **kwargs)
ctrl = np.array([(0, 3), (4, -999)], dtype=[(_, int) for _ in "ac"])
assert_equal(test, ctrl)
def test_withmissing_float(self):
- data = StringIO.StringIO('A,B\n0,1.5\n2,-999.00')
+ data = StringIO('A,B\n0,1.5\n2,-999.00')
test = np.mafromtxt(data, dtype=None, delimiter=',',
missing_values='-999.0', names=True,)
control = ma.array([(0, 1.5), (2, -1.)],
@@ -894,7 +900,7 @@ M 33 21.99
def test_with_masked_column_uniform(self):
"Test masked column"
- data = StringIO.StringIO('1 2 3\n4 5 6\n')
+ data = StringIO('1 2 3\n4 5 6\n')
test = np.genfromtxt(data, dtype=None,
missing_values='2,5', usemask=True)
control = ma.array([[1, 2, 3], [4, 5, 6]], mask=[[0, 1, 0], [0, 1, 0]])
@@ -902,7 +908,7 @@ M 33 21.99
def test_with_masked_column_various(self):
"Test masked column"
- data = StringIO.StringIO('True 2 3\nFalse 5 6\n')
+ data = StringIO('True 2 3\nFalse 5 6\n')
test = np.genfromtxt(data, dtype=None,
missing_values='2,5', usemask=True)
control = ma.array([(1, 2, 3), (0, 5, 6)],
@@ -917,7 +923,7 @@ M 33 21.99
for i in range(5):
data[10 * i] = "2, 2, 2, 2 2"
data.insert(0, "a, b, c, d, e")
- mdata = StringIO.StringIO("\n".join(data))
+ mdata = StringIO("\n".join(data))
#
kwargs = dict(delimiter=",", dtype=None, names=True)
# XXX: is there a better way to get the return value of the callable in
@@ -940,7 +946,7 @@ M 33 21.99
for i in range(5):
data[10 * i] = "2, 2, 2, 2 2"
data.insert(0, "a, b, c, d, e")
- mdata = StringIO.StringIO("\n".join(data))
+ mdata = StringIO("\n".join(data))
kwargs = dict(delimiter=",", dtype=None, names=True,
invalid_raise=False)
# XXX: is there a better way to get the return value of the callable in
@@ -964,7 +970,7 @@ M 33 21.99
def test_inconsistent_dtype(self):
"Test inconsistent dtype"
data = ["1, 1, 1, 1, -1.1"] * 50
- mdata = StringIO.StringIO("\n".join(data))
+ mdata = StringIO("\n".join(data))
converters = {4: lambda x:"(%s)" % x}
kwargs = dict(delimiter=",", converters=converters,
@@ -975,7 +981,7 @@ M 33 21.99
def test_default_field_format(self):
"Test default format"
data = "0, 1, 2.3\n4, 5, 6.7"
- mtest = np.ndfromtxt(StringIO.StringIO(data),
+ mtest = np.ndfromtxt(StringIO(data),
delimiter=",", dtype=None, defaultfmt="f%02i")
ctrl = np.array([(0, 1, 2.3), (4, 5, 6.7)],
dtype=[("f00", int), ("f01", int), ("f02", float)])
@@ -984,7 +990,7 @@ M 33 21.99
def test_single_dtype_wo_names(self):
"Test single dtype w/o names"
data = "0, 1, 2.3\n4, 5, 6.7"
- mtest = np.ndfromtxt(StringIO.StringIO(data),
+ mtest = np.ndfromtxt(StringIO(data),
delimiter=",", dtype=float, defaultfmt="f%02i")
ctrl = np.array([[0., 1., 2.3], [4., 5., 6.7]], dtype=float)
assert_equal(mtest, ctrl)
@@ -992,7 +998,7 @@ M 33 21.99
def test_single_dtype_w_explicit_names(self):
"Test single dtype w explicit names"
data = "0, 1, 2.3\n4, 5, 6.7"
- mtest = np.ndfromtxt(StringIO.StringIO(data),
+ mtest = np.ndfromtxt(StringIO(data),
delimiter=",", dtype=float, names="a, b, c")
ctrl = np.array([(0., 1., 2.3), (4., 5., 6.7)],
dtype=[(_, float) for _ in "abc"])
@@ -1001,7 +1007,7 @@ M 33 21.99
def test_single_dtype_w_implicit_names(self):
"Test single dtype w implicit names"
data = "a, b, c\n0, 1, 2.3\n4, 5, 6.7"
- mtest = np.ndfromtxt(StringIO.StringIO(data),
+ mtest = np.ndfromtxt(StringIO(data),
delimiter=",", dtype=float, names=True)
ctrl = np.array([(0., 1., 2.3), (4., 5., 6.7)],
dtype=[(_, float) for _ in "abc"])
@@ -1010,7 +1016,7 @@ M 33 21.99
def test_easy_structured_dtype(self):
"Test easy structured dtype"
data = "0, 1, 2.3\n4, 5, 6.7"
- mtest = np.ndfromtxt(StringIO.StringIO(data), delimiter=",",
+ mtest = np.ndfromtxt(StringIO(data), delimiter=",",
dtype=(int, float, float), defaultfmt="f_%02i")
ctrl = np.array([(0, 1., 2.3), (4, 5., 6.7)],
dtype=[("f_00", int), ("f_01", float), ("f_02", float)])
@@ -1020,11 +1026,11 @@ M 33 21.99
"Test autostrip"
data = "01/01/2003 , 1.3, abcde"
kwargs = dict(delimiter=",", dtype=None)
- mtest = np.ndfromtxt(StringIO.StringIO(data), **kwargs)
+ mtest = np.ndfromtxt(StringIO(data), **kwargs)
ctrl = np.array([('01/01/2003 ', 1.3, ' abcde')],
dtype=[('f0', '|S12'), ('f1', float), ('f2', '|S8')])
assert_equal(mtest, ctrl)
- mtest = np.ndfromtxt(StringIO.StringIO(data), autostrip=True, **kwargs)
+ mtest = np.ndfromtxt(StringIO(data), autostrip=True, **kwargs)
ctrl = np.array([('01/01/2003', 1.3, 'abcde')],
dtype=[('f0', '|S10'), ('f1', float), ('f2', '|S5')])
assert_equal(mtest, ctrl)
@@ -1036,17 +1042,17 @@ M 33 21.99
# w/ dtype=None
ctrl = np.array([(0, 1, 2), (3, 4, 5)],
dtype=[(_, int) for _ in ('A', 'f0', 'C')])
- test = np.ndfromtxt(StringIO.StringIO(data), dtype=None, **kwargs)
+ test = np.ndfromtxt(StringIO(data), dtype=None, **kwargs)
assert_equal(test, ctrl)
# w/ default dtype
ctrl = np.array([(0, 1, 2), (3, 4, 5)],
dtype=[(_, float) for _ in ('A', 'f0', 'C')])
- test = np.ndfromtxt(StringIO.StringIO(data), **kwargs)
+ test = np.ndfromtxt(StringIO(data), **kwargs)
def test_names_auto_completion(self):
"Make sure that names are properly completed"
data = "1 2 3\n 4 5 6"
- test = np.genfromtxt(StringIO.StringIO(data),
+ test = np.genfromtxt(StringIO(data),
dtype=(int, float, int), names="a")
ctrl = np.array([(1, 2, 3), (4, 5, 6)],
dtype=[('a', int), ('f0', float), ('f1', int)])
@@ -1058,13 +1064,13 @@ M 33 21.99
kwargs = dict(delimiter=(5, 5, 4), names=True, dtype=None)
ctrl = np.array([(0, 1, 2.3), (45, 67, 9.)],
dtype=[('A', int), ('B', int), ('C', float)])
- test = np.ndfromtxt(StringIO.StringIO(data), **kwargs)
+ test = np.ndfromtxt(StringIO(data), **kwargs)
assert_equal(test, ctrl)
#
kwargs = dict(delimiter=5, names=True, dtype=None)
ctrl = np.array([(0, 1, 2.3), (45, 67, 9.)],
dtype=[('A', int), ('B', int), ('C', float)])
- test = np.ndfromtxt(StringIO.StringIO(data), **kwargs)
+ test = np.ndfromtxt(StringIO(data), **kwargs)
assert_equal(test, ctrl)
def test_filling_values(self):
@@ -1072,13 +1078,13 @@ M 33 21.99
data = "1, 2, 3\n1, , 5\n0, 6, \n"
kwargs = dict(delimiter=",", dtype=None, filling_values= -999)
ctrl = np.array([[1, 2, 3], [1, -999, 5], [0, 6, -999]], dtype=int)
- test = np.ndfromtxt(StringIO.StringIO(data), **kwargs)
+ test = np.ndfromtxt(StringIO(data), **kwargs)
assert_equal(test, ctrl)
def test_recfromtxt(self):
#
- data = StringIO.StringIO('A,B\n0,1\n2,3')
+ data = StringIO('A,B\n0,1\n2,3')
kwargs = dict(delimiter=",", missing_values="N/A", names=True)
test = np.recfromtxt(data, **kwargs)
control = np.array([(0, 1), (2, 3)],
@@ -1086,7 +1092,7 @@ M 33 21.99
self.failUnless(isinstance(test, np.recarray))
assert_equal(test, control)
#
- data = StringIO.StringIO('A,B\n0,1\n2,N/A')
+ data = StringIO('A,B\n0,1\n2,N/A')
test = np.recfromtxt(data, dtype=None, usemask=True, **kwargs)
control = ma.array([(0, 1), (2, -1)],
mask=[(False, False), (False, True)],
@@ -1098,7 +1104,7 @@ M 33 21.99
def test_recfromcsv(self):
#
- data = StringIO.StringIO('A,B\n0,1\n2,3')
+ data = StringIO('A,B\n0,1\n2,3')
kwargs = dict(missing_values="N/A", names=True, case_sensitive=True)
test = np.recfromcsv(data, dtype=None, **kwargs)
control = np.array([(0, 1), (2, 3)],
@@ -1106,7 +1112,7 @@ M 33 21.99
self.failUnless(isinstance(test, np.recarray))
assert_equal(test, control)
#
- data = StringIO.StringIO('A,B\n0,1\n2,N/A')
+ data = StringIO('A,B\n0,1\n2,N/A')
test = np.recfromcsv(data, dtype=None, usemask=True, **kwargs)
control = ma.array([(0, 1), (2, -1)],
mask=[(False, False), (False, True)],
@@ -1115,7 +1121,7 @@ M 33 21.99
assert_equal(test.mask, control.mask)
assert_equal(test.A, [0, 2])
#
- data = StringIO.StringIO('A,B\n0,1\n2,3')
+ data = StringIO('A,B\n0,1\n2,3')
test = np.recfromcsv(data, missing_values='N/A',)
control = np.array([(0, 1), (2, 3)],
dtype=[('a', np.int), ('b', np.int)])
@@ -1126,7 +1132,7 @@ M 33 21.99
def test_gzip_load():
a = np.random.random((5, 5))
- s = StringIO.StringIO()
+ s = StringIO()
f = gzip.GzipFile(fileobj=s, mode="w")
np.save(f, a)
@@ -1143,7 +1149,7 @@ def test_gzip_loadtxt():
# reopened by another open call. So we first put the gzipped string
# of the test reference array, write it to a securely opened file,
# which is then read from by the loadtxt function
- s = StringIO.StringIO()
+ s = StringIO()
g = gzip.GzipFile(fileobj=s, mode='w')
g.write('1 2 3\n')
g.close()
@@ -1159,7 +1165,7 @@ def test_gzip_loadtxt():
os.unlink(name)
def test_gzip_loadtxt_from_string():
- s = StringIO.StringIO()
+ s = StringIO()
f = gzip.GzipFile(fileobj=s, mode="w")
f.write('1 2 3\n')
f.close()
@@ -1169,7 +1175,7 @@ def test_gzip_loadtxt_from_string():
assert_array_equal(np.loadtxt(f), [1, 2, 3])
def test_npzfile_dict():
- s = StringIO.StringIO()
+ s = StringIO()
x = np.zeros((3, 3))
y = np.zeros((3, 3))