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authormattip <matti.picus@gmail.com>2023-02-01 16:14:23 +0200
committermattip <matti.picus@gmail.com>2023-02-01 16:14:23 +0200
commit28706afcbe1bf35413049d0283e6e01ef9abcb1a (patch)
tree6cd3591ea3d0a44f4928e7dea9ad713110f57ee5 /numpy
parent8bfaaf35c80a02657c353b641652de9fa4719daa (diff)
downloadnumpy-28706afcbe1bf35413049d0283e6e01ef9abcb1a.tar.gz
MAINT, BUG: fixes from review and testing
Diffstat (limited to 'numpy')
-rw-r--r--numpy/core/code_generators/generate_umath.py47
-rw-r--r--numpy/core/src/umath/dispatching.c37
-rw-r--r--numpy/core/src/umath/loops.c.src79
-rw-r--r--numpy/core/src/umath/loops.h.src4
-rw-r--r--numpy/core/src/umath/loops_arithm_fp.dispatch.c.src4
-rw-r--r--numpy/core/src/umath/loops_arithmetic.dispatch.c.src8
-rw-r--r--numpy/core/src/umath/ufunc_object.c45
-rw-r--r--numpy/core/tests/test_ufunc.py34
8 files changed, 177 insertions, 81 deletions
diff --git a/numpy/core/code_generators/generate_umath.py b/numpy/core/code_generators/generate_umath.py
index ff32cf1b5..b45f89344 100644
--- a/numpy/core/code_generators/generate_umath.py
+++ b/numpy/core/code_generators/generate_umath.py
@@ -415,6 +415,7 @@ defdict = {
TypeDescription('m', FullTypeDescr, 'mm', 'd', cfunc_alias='divide'),
],
TD(O, f='PyNumber_TrueDivide'),
+ indexed=flts
),
'conjugate':
Ufunc(1, 1, None,
@@ -1298,15 +1299,11 @@ def make_ufuncs(funcdict):
/* info is borrowed, no need to decref*/
}}
""")
- cname = name
- if cname == "floor_divide":
- # XXX there must be a better way...
- cname = "divide"
mlist.append(fmt.format(
typenum=f"NPY_{english_upper(chartoname[c])}",
count=uf.nin+uf.nout,
name=name,
- funcname = f"{english_upper(chartoname[c])}_{cname}_indexed",
+ funcname = f"{english_upper(chartoname[c])}_{name}_indexed",
))
mlist.append(r"""PyDict_SetItemString(dictionary, "%s", f);""" % name)
@@ -1335,44 +1332,10 @@ def make_code(funcdict, filename):
#include "_umath_doc_generated.h"
%s
- /*
- * Return the PyArrayMethodObject or PyCapsule that matches a registered
- * tuple of identical dtypes. Return a borrowed ref of the first match.
- */
- static PyObject *
+ /* Returns a borrowed ref of the second value in the matching info tuple */
+ PyObject *
get_info_no_cast(PyUFuncObject *ufunc, PyArray_DTypeMeta *op_dtype,
- int ndtypes)
- {
-
- PyObject *t_dtypes = PyTuple_New(ndtypes);
- if (t_dtypes == NULL) {
- return NULL;
- }
- for (int i=0; i < ndtypes; i++) {
- PyTuple_SetItem(t_dtypes, i, (PyObject *)op_dtype);
- }
- PyObject *loops = ufunc->_loops;
- Py_ssize_t length = PyList_Size(loops);
- for (Py_ssize_t i = 0; i < length; i++) {
- PyObject *item = PyList_GetItem(loops, i);
- PyObject *cur_DType_tuple = PyTuple_GetItem(item, 0);
- int cmp = PyObject_RichCompareBool(cur_DType_tuple,
- t_dtypes, Py_EQ);
- if (cmp < 0) {
- Py_DECREF(t_dtypes);
- return NULL;
- }
- if (cmp == 0) {
- continue;
- }
- /* Got the match */
- Py_DECREF(t_dtypes);
- return PyTuple_GetItem(item, 1);
- }
- Py_DECREF(t_dtypes);
- Py_RETURN_NONE;
- }
-
+ int ndtypes);
static int
InitOperators(PyObject *dictionary) {
diff --git a/numpy/core/src/umath/dispatching.c b/numpy/core/src/umath/dispatching.c
index e09568d69..fee77b2d6 100644
--- a/numpy/core/src/umath/dispatching.c
+++ b/numpy/core/src/umath/dispatching.c
@@ -1240,3 +1240,40 @@ install_logical_ufunc_promoter(PyObject *ufunc)
return PyUFunc_AddLoop((PyUFuncObject *)ufunc, info, 0);
}
+
+/*
+ * Return the PyArrayMethodObject or PyCapsule that matches a registered
+ * tuple of identical dtypes. Return a borrowed ref of the first match.
+ */
+NPY_NO_EXPORT PyObject *
+get_info_no_cast(PyUFuncObject *ufunc, PyArray_DTypeMeta *op_dtype,
+ int ndtypes)
+{
+ PyObject *t_dtypes = PyTuple_New(ndtypes);
+ if (t_dtypes == NULL) {
+ return NULL;
+ }
+ for (int i=0; i < ndtypes; i++) {
+ PyTuple_SetItem(t_dtypes, i, (PyObject *)op_dtype);
+ }
+ PyObject *loops = ufunc->_loops;
+ Py_ssize_t length = PyList_Size(loops);
+ for (Py_ssize_t i = 0; i < length; i++) {
+ PyObject *item = PyList_GetItem(loops, i);
+ PyObject *cur_DType_tuple = PyTuple_GetItem(item, 0);
+ int cmp = PyObject_RichCompareBool(cur_DType_tuple,
+ t_dtypes, Py_EQ);
+ if (cmp < 0) {
+ Py_DECREF(t_dtypes);
+ return NULL;
+ }
+ if (cmp == 0) {
+ continue;
+ }
+ /* Got the match */
+ Py_DECREF(t_dtypes);
+ return PyTuple_GetItem(item, 1);
+ }
+ Py_DECREF(t_dtypes);
+ Py_RETURN_NONE;
+}
diff --git a/numpy/core/src/umath/loops.c.src b/numpy/core/src/umath/loops.c.src
index cd5a431cd..87ef2fca9 100644
--- a/numpy/core/src/umath/loops.c.src
+++ b/numpy/core/src/umath/loops.c.src
@@ -460,6 +460,7 @@ BOOL_@kind@(char **args, npy_intp const *dimensions, npy_intp const *steps, void
*/
#define @TYPE@_floor_divide @TYPE@_divide
+#define @TYPE@_floor_divide_indexed @TYPE@_divide_indexed
#define @TYPE@_fmax @TYPE@_maximum
#define @TYPE@_fmin @TYPE@_minimum
@@ -531,7 +532,8 @@ NPY_NO_EXPORT NPY_GCC_OPT_3 @ATTR@ void
#if @CHK@
NPY_NO_EXPORT NPY_GCC_OPT_3 @ATTR@ void
-@TYPE@_@kind@@isa@(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func))
+@TYPE@_@kind@@isa@(char **args, npy_intp const *dimensions,
+ npy_intp const *steps, void *NPY_UNUSED(func))
{
if (IS_BINARY_REDUCE) {
BINARY_REDUCE_LOOP_FAST(@type@, io1 @OP@= in2);
@@ -542,17 +544,19 @@ NPY_NO_EXPORT NPY_GCC_OPT_3 @ATTR@ void
}
NPY_NO_EXPORT NPY_GCC_OPT_3 @ATTR@ int
-@TYPE@_@kind@@isa@_indexed(PyArrayMethod_Context *NPY_UNUSED(context), char * const*args, npy_intp const *dimensions, npy_intp const *steps, NpyAuxData *NPY_UNUSED(func))
+@TYPE@_@kind@@isa@_indexed(PyArrayMethod_Context *NPY_UNUSED(context),
+ char * const*args, npy_intp const *dimensions,
+ npy_intp const *steps, NpyAuxData *NPY_UNUSED(func))
{
char *ip1 = args[0];
- npy_intp *indx = (npy_intp *)args[1];
+ char *indx = args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1], isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
@type@ *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
- indexed = (@type@ *)(ip1 + is1 * indx[0]);
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
+ indexed = (@type@ *)(ip1 + is1 * *(npy_intp *)indx);
indexed[0] = indexed[0] @OP@ *(@type@ *)value;
}
return 0;
@@ -1418,6 +1422,25 @@ NPY_NO_EXPORT void
}
}
+NPY_NO_EXPORT int
+@TYPE@_floor_divide_indexed(PyArrayMethod_Context *NPY_UNUSED(context),
+ char **args, npy_intp const *dimensions, npy_intp const *steps,
+ void *NPY_UNUSED(func))
+{
+ char *ip1 = args[0];
+ char *indx = args[1];
+ char *value = args[2];
+ npy_intp is1 = steps[0], isindex = steps[1], isb = steps[2];
+ npy_intp n = dimensions[0];
+ npy_intp i;
+ @type@ *indexed;
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
+ indexed = (@type@ *)(ip1 + is1 * *(npy_intp *)indx);
+ indexed[0] = npy_floor_divide@c@(indexed[0], *(@type@ *)value);
+ }
+ return 0;
+}
+
NPY_NO_EXPORT void
@TYPE@_remainder(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func))
{
@@ -1553,20 +1576,23 @@ LONGDOUBLE_@kind@(char **args, npy_intp const *dimensions, npy_intp const *steps
}
}
-NPY_NO_EXPORT void
-LONGDOUBLE_@kind@_indexed(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func))
+NPY_NO_EXPORT int
+LONGDOUBLE_@kind@_indexed(PyArrayMethod_Context *NPY_UNUSED(context),
+ char **args, npy_intp const *dimensions, npy_intp const *steps,
+ void *NPY_UNUSED(func))
{
char *ip1 = args[0];
- npy_intp *indx = (npy_intp *)args[1];
+ char *indx = args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1], isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
npy_longdouble *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
- indexed = (npy_longdouble *)(ip1 + is1 * indx[0]);
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
+ indexed = (npy_longdouble *)(ip1 + is1 * *(npy_intp *)indx);
indexed[0] = indexed[0] @OP@ *(npy_longdouble *)value;
}
+ return 0;
}
/**end repeat**/
@@ -1679,14 +1705,14 @@ NPY_NO_EXPORT int
HALF_@kind@_indexed(void *NPY_UNUSED(context), char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func))
{
char *ip1 = args[0];
- npy_intp *indx = (npy_intp *)args[1];
+ char *indx = args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1], isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
npy_half *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
- indexed = (npy_half *)(ip1 + is1 * indx[0]);
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
+ indexed = (npy_half *)(ip1 + is1 * *(npy_intp *)indx);
const float v = npy_half_to_float(*(npy_half *)value);
indexed[0] = npy_float_to_half(npy_half_to_float(indexed[0]) @OP@ v);
}
@@ -1828,6 +1854,27 @@ HALF_floor_divide(char **args, npy_intp const *dimensions, npy_intp const *steps
}
}
+NPY_NO_EXPORT int
+HALF_floor_divide_indexed(PyArrayMethod_Context *NPY_UNUSED(context),
+ char **args, npy_intp const *dimensions, npy_intp const *steps,
+ void *NPY_UNUSED(func))
+{
+ char *ip1 = args[0];
+ char *indx = args[1];
+ char *value = args[2];
+ npy_intp is1 = steps[0], isindex = steps[1], isb = steps[2];
+ npy_intp n = dimensions[0];
+ npy_intp i;
+ npy_half *indexed;
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
+ indexed = (npy_half *)(ip1 + is1 * *(npy_intp *)indx);
+ float v = npy_half_to_float(*(npy_half *)value);
+ float div = npy_floor_dividef(npy_half_to_float(indexed[0]), v);
+ indexed[0] = npy_float_to_half(div);
+ }
+ return 0;
+}
+
NPY_NO_EXPORT void
HALF_remainder(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func))
{
diff --git a/numpy/core/src/umath/loops.h.src b/numpy/core/src/umath/loops.h.src
index ee69330dd..b25f6770f 100644
--- a/numpy/core/src/umath/loops.h.src
+++ b/numpy/core/src/umath/loops.h.src
@@ -134,6 +134,7 @@ NPY_CPU_DISPATCH_DECLARE(NPY_NO_EXPORT void @TYPE@_@kind@,
*/
#define @S@@TYPE@_floor_divide @S@@TYPE@_divide
+#define @S@@TYPE@_floor_divide_indexed @S@@TYPE@_divide_indexed
#define @S@@TYPE@_fmax @S@@TYPE@_maximum
#define @S@@TYPE@_fmin @S@@TYPE@_minimum
@@ -491,6 +492,9 @@ NPY_NO_EXPORT void
NPY_NO_EXPORT void
@TYPE@_floor_divide(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func));
+NPY_NO_EXPORT int
+@TYPE@_floor_divide_indexed(PyArrayMethod_Context *NPY_UNUSED(context), char *const *args, npy_intp const *dimensions, npy_intp const *steps, NpyAuxData *NPY_UNUSED(func));
+
NPY_NO_EXPORT void
@TYPE@_remainder(char **args, npy_intp const *dimensions, npy_intp const *steps, void *NPY_UNUSED(func));
diff --git a/numpy/core/src/umath/loops_arithm_fp.dispatch.c.src b/numpy/core/src/umath/loops_arithm_fp.dispatch.c.src
index d37facef8..a00ef1e4b 100644
--- a/numpy/core/src/umath/loops_arithm_fp.dispatch.c.src
+++ b/numpy/core/src/umath/loops_arithm_fp.dispatch.c.src
@@ -553,11 +553,11 @@ NPY_NO_EXPORT int NPY_CPU_DISPATCH_CURFX(@TYPE@_@kind@_indexed)
char *ip1 = args[0];
npy_intp *indx = (npy_intp *)args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1] / sizeof(npy_intp), isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
@type@ *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
indexed = (@type@ *)(ip1 + is1 * indx[0]);
indexed[0] = indexed[0] @OP@ *(@type@ *)value;
}
diff --git a/numpy/core/src/umath/loops_arithmetic.dispatch.c.src b/numpy/core/src/umath/loops_arithmetic.dispatch.c.src
index cef2adb34..9f3043f48 100644
--- a/numpy/core/src/umath/loops_arithmetic.dispatch.c.src
+++ b/numpy/core/src/umath/loops_arithmetic.dispatch.c.src
@@ -402,11 +402,11 @@ NPY_NO_EXPORT int NPY_CPU_DISPATCH_CURFX(@TYPE@_divide_indexed)
char *ip1 = args[0];
npy_intp *indx = (npy_intp *)args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1] / sizeof(npy_intp), isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
@type@ *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
indexed = (@type@ *)(ip1 + is1 * indx[0]);
indexed[0] = floor_div_@TYPE@(indexed[0], *(@type@ *)value);
}
@@ -488,11 +488,11 @@ NPY_NO_EXPORT int NPY_CPU_DISPATCH_CURFX(@TYPE@_divide_indexed)
char *ip1 = args[0];
npy_intp *indx = (npy_intp *)args[1];
char *value = args[2];
- npy_intp is1 = steps[0], is2 = steps[1] / sizeof(npy_intp), os1 = steps[2];
+ npy_intp is1 = steps[0], isindex = steps[1] / sizeof(npy_intp), isb = steps[2];
npy_intp n = dimensions[0];
npy_intp i;
@type@ *indexed;
- for(i = 0; i < n; i++, indx += is2, value += os1) {
+ for(i = 0; i < n; i++, indx += isindex, value += isb) {
indexed = (@type@ *)(ip1 + is1 * indx[0]);
@type@ in2 = *(@type@ *)value;
if (NPY_UNLIKELY(in2 == 0)) {
diff --git a/numpy/core/src/umath/ufunc_object.c b/numpy/core/src/umath/ufunc_object.c
index d088e22de..5f199129f 100644
--- a/numpy/core/src/umath/ufunc_object.c
+++ b/numpy/core/src/umath/ufunc_object.c
@@ -5894,26 +5894,22 @@ new_array_op(PyArrayObject *op_array, char *data)
}
/*
- * If operands are 1D we can use the indexed loop to do the work
- * Returns 0 if successful, -1 otherwise
+ * Use an indexed loop to do the work
+ * Returns 0 if successful
*/
static int
-try_trivial_at_loop(PyArrayMethodObject *ufuncimpl, NPY_ARRAYMETHOD_FLAGS flags,
+trivial_at_loop(PyArrayMethodObject *ufuncimpl, NPY_ARRAYMETHOD_FLAGS flags,
PyArrayMapIterObject *iter,
PyArrayObject *op1_array, PyArrayObject *op2_array,
PyArrayMethod_Context *context)
{
- if (PyArray_NDIM(op1_array) != 1) {
- return -1;
- }
- /* check that nop == 3 */
- if (ufuncimpl->nin >1 && PyArray_NDIM(op2_array) != 1) {
- return -1;
- }
- if (iter->numiter > 1) {
+ int buffersize=0, errormask = 0;
+ int res;
+ char *args[3];
+ const char * ufunc_name = ufunc_get_name_cstr((PyUFuncObject *)context->caller);
+ if (_get_bufsize_errmask(NULL, ufunc_name, &buffersize, &errormask) < 0) {
return -1;
}
- char *args[3];
npy_intp dimensions = iter->size;
npy_intp steps[3];
args[0] = (char *) iter->baseoffset;
@@ -5922,8 +5918,20 @@ try_trivial_at_loop(PyArrayMethodObject *ufuncimpl, NPY_ARRAYMETHOD_FLAGS flags,
steps[0] = iter->fancy_strides[0];
steps[1] = iter->outer_strides[0];
steps[2] = PyArray_STRIDE(op2_array, 0);
- ufuncimpl->contiguous_indexed_loop(context, args, &dimensions, steps, NULL);
- return 0;
+ res = ufuncimpl->contiguous_indexed_loop(context, args, &dimensions, steps, NULL);
+ /*
+ * An error should only be possible if `res != 0` is already set.
+ * But this is not strictly correct since old-style ufuncs (e.g. `power`
+ * released the GIL but manually set an Exception).
+ */
+ if (PyErr_Occurred()) {
+ res = -1;
+ }
+
+ if (res == 0 && !(flags & NPY_METH_NO_FLOATINGPOINT_ERRORS)) {
+ res = _check_ufunc_fperr(errormask, NULL, ufunc_name);
+ }
+ return res;
}
static int
@@ -6421,12 +6429,15 @@ ufunc_at(PyUFuncObject *ufunc, PyObject *args)
* - the matching info has a indexed loop
* - all operands are 1d
*/
- if (ufuncimpl->contiguous_indexed_loop != NULL) {
- res = try_trivial_at_loop(ufuncimpl, flags, iter, op1_array,
+ if ((ufuncimpl->contiguous_indexed_loop != NULL) &&
+ (PyArray_NDIM(op1_array) == 1) &&
+ (ufuncimpl->nin == 1 || PyArray_NDIM(op2_array) == 1) &&
+ (iter->numiter == 1)) {
+ res = trivial_at_loop(ufuncimpl, flags, iter, op1_array,
op2_array, &context);
}
- if (res == -1) {
+ else {
/* Couldn't use the fastest path, use the faster path */
res = ufunc_at__fast_iter(ufunc, flags, iter, iter2, op1_array,
op2_array, strided_loop, &context, auxdata);
diff --git a/numpy/core/tests/test_ufunc.py b/numpy/core/tests/test_ufunc.py
index 55122d697..22370bbd8 100644
--- a/numpy/core/tests/test_ufunc.py
+++ b/numpy/core/tests/test_ufunc.py
@@ -1986,6 +1986,40 @@ class TestUfunc:
with pytest.raises(ValueError):
# second operand cannot be converted to an array
np.add.at(a, [2, 5, 3], [[1, 2], 1])
+
+ # ufuncs with indexed loops for perfomance in ufunc.at
+ indexed_ufuncs = [np.add, np.subtract, np.multiply, np.floor_divide, np.divide]
+ @pytest.mark.parametrize(
+ "typecode", np.typecodes['AllInteger'] + np.typecodes['Float'])
+ @pytest.mark.parametrize("ufunc", indexed_ufuncs)
+ def test_ufunc_at_inner_loops(self, typecode, ufunc):
+ if ufunc is np.divide and typecode in np.typecodes['AllInteger']:
+ # Avoid divide-by-zero and inf for integer divide
+ a = np.ones(100, dtype=typecode)
+ indx = np.random.randint(100, size=30, dtype=np.intp)
+ vals = np.arange(1, 31, dtype=typecode)
+ else:
+ a = np.ones(1000, dtype=typecode)
+ indx = np.random.randint(1000, size=3000, dtype=np.intp)
+ vals = np.arange(3000, dtype=typecode)
+ atag = a.copy()
+ # Do the calculation twice and compare the answers
+ with warnings.catch_warnings(record=True) as w_at:
+ warnings.simplefilter('always')
+ ufunc.at(a, indx, vals)
+ with warnings.catch_warnings(record=True) as w_loop:
+ warnings.simplefilter('always')
+ for i,v in zip(indx, vals):
+ # Make sure all the work happens inside the ufunc
+ # in order to duplicate error/warning handling
+ ufunc(atag[i], v, out=atag[i:i+1], casting="unsafe")
+ assert_equal(atag, a)
+ # If w_loop warned, make sure w_at warned as well
+ if len(w_loop) > 0:
+ #
+ assert len(w_at) > 0
+ assert w_at[0].category == w_loop[0].category
+ assert str(w_at[0].message)[:10] == str(w_loop[0].message)[:10]
def test_ufunc_at_multiD(self):
a = np.arange(9).reshape(3, 3)